Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2239 ATGGATAGTATCGGAGAGGATTACTTGAATTCCTTTGGAGGTGACATCTTCATAGCAACCGAAGAGTTCGACAGTTGGGAATTCGACGAGCCGGTTTCTGGCTATTATGATTCGAGTTCGCCGGAGGGATTTCTGTCGTCGTCGGCGGCTTCGAAGAACATAGTATCGGAAAGGAATAGGAGAAGGAAGCTCAACGAGAGGCTTTTTGCACTCCGATCGGTTGTTCCCAATATAACTAAGATGGATAAGGCTTCCATTATAAAAGATGCAATCGATTACATCGAAGATTTGCATGAGCAAGAGAGGAGGATTCAAGCTGAAATTTACGAGCTCGAATCGGGAAAGTTAAAGAAGATAGCGGGGTATGAATTTGACCAGGAGCTTCCCTCGTTGCTCAGATCAAAGAGGAAGAAAACTGAACGGTACATCAGCTATGATTCTTCTGCTTCAAGAATTTCCCCCGTTGAAGTCCTGGATCTTAGTGTAACATACATGGGGGACAGAACAATAGTAGTGAGCATGGCCTGCTGCAAAAGAGCAGATTCAATGGTTAAACTCTGTGAAGTTTTTGAATCACTGAAGCTCAAGATTATCACTGCCAATATTACTGCTGTCTCTGGAAGGCTTTTGAAAACTGTCTTCATTGAGGCTGAGCAAGAGGAGAGAGATTATTTGAAGATTAAAATAGAAACAGCCATTGCAGGTCTCAAGGATCCACATAGCCCCATGAGTATCTGA 738 43.36 MDSIGEDYLNSFGGDIFIATEEFDSWEFDEPVSGYYDSSSPEGFLSSSAASKNIVSERNRRRKLNERLFALRSVVPNITKMDKASIIKDAIDYIEDLHEQERRIQAEIYELESGKLKKIAGYEFDQELPSLLRSKRKKTERYISYDSSASRISPVEVLDLSVTYMGDRTIVVSMACCKRADSMVKLCEVFESLKLKIITANITAVSGRLLKTVFIEAEQEERDYLKIKIETAIAGLKDPHSPMSI 245
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 30294908 30298904 - CrPI670011_06g022390.1 Cre06g2239 501701
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2239 245 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 45 114 - -
Cre06g2239 245 Pfam Helix-loop-helix DNA-binding domain 54 97 IPR011598 GO:0046983(InterPro)
Cre06g2239 245 SMART finulus 54 103 IPR011598 GO:0046983(InterPro)
Cre06g2239 245 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 48 223 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cre06g2239 245 Gene3D - 46 114 IPR036638 GO:0046983(InterPro)
Cre06g2239 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 112 IPR036638 GO:0046983(InterPro)
Cre06g2239 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2701 Cre-Chr5:37936977 Cre06g2239 Cre-Chr6:30294908 2.20E-18 dispersed
Cre06g2239 Cre-Chr6:30294908 Cre11g1447 Cre-Chr11:21715853 7.70E-12 dispersed
Cre11g1598 Cre-Chr11:26382814 Cre06g2239 Cre-Chr6:30294908 1.40E-61 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53919 PF00010 HLH 1.60E-11 No_clan Cre TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2239 - - - 0.0