Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre06g2239 | ATGGATAGTATCGGAGAGGATTACTTGAATTCCTTTGGAGGTGACATCTTCATAGCAACCGAAGAGTTCGACAGTTGGGAATTCGACGAGCCGGTTTCTGGCTATTATGATTCGAGTTCGCCGGAGGGATTTCTGTCGTCGTCGGCGGCTTCGAAGAACATAGTATCGGAAAGGAATAGGAGAAGGAAGCTCAACGAGAGGCTTTTTGCACTCCGATCGGTTGTTCCCAATATAACTAAGATGGATAAGGCTTCCATTATAAAAGATGCAATCGATTACATCGAAGATTTGCATGAGCAAGAGAGGAGGATTCAAGCTGAAATTTACGAGCTCGAATCGGGAAAGTTAAAGAAGATAGCGGGGTATGAATTTGACCAGGAGCTTCCCTCGTTGCTCAGATCAAAGAGGAAGAAAACTGAACGGTACATCAGCTATGATTCTTCTGCTTCAAGAATTTCCCCCGTTGAAGTCCTGGATCTTAGTGTAACATACATGGGGGACAGAACAATAGTAGTGAGCATGGCCTGCTGCAAAAGAGCAGATTCAATGGTTAAACTCTGTGAAGTTTTTGAATCACTGAAGCTCAAGATTATCACTGCCAATATTACTGCTGTCTCTGGAAGGCTTTTGAAAACTGTCTTCATTGAGGCTGAGCAAGAGGAGAGAGATTATTTGAAGATTAAAATAGAAACAGCCATTGCAGGTCTCAAGGATCCACATAGCCCCATGAGTATCTGA | 738 | 43.36 | MDSIGEDYLNSFGGDIFIATEEFDSWEFDEPVSGYYDSSSPEGFLSSSAASKNIVSERNRRRKLNERLFALRSVVPNITKMDKASIIKDAIDYIEDLHEQERRIQAEIYELESGKLKKIAGYEFDQELPSLLRSKRKKTERYISYDSSASRISPVEVLDLSVTYMGDRTIVVSMACCKRADSMVKLCEVFESLKLKIITANITAVSGRLLKTVFIEAEQEERDYLKIKIETAIAGLKDPHSPMSI | 245 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 30294908 | 30298904 | - | CrPI670011_06g022390.1 | Cre06g2239 | 501701 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre06g2239 | 245 | FunFam | Basic helix-loop-helix (BHLH) DNA-binding superfamily protein | 45 | 114 | - | - | |
| Cre06g2239 | 245 | Pfam | Helix-loop-helix DNA-binding domain | 54 | 97 | IPR011598 | GO:0046983(InterPro) | |
| Cre06g2239 | 245 | SMART | finulus | 54 | 103 | IPR011598 | GO:0046983(InterPro) | |
| Cre06g2239 | 245 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 48 | 223 | IPR051358 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER) | |
| Cre06g2239 | 245 | Gene3D | - | 46 | 114 | IPR036638 | GO:0046983(InterPro) | |
| Cre06g2239 | 245 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 49 | 112 | IPR036638 | GO:0046983(InterPro) | |
| Cre06g2239 | 245 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 48 | 97 | IPR011598 | GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre05g2701 | Cre-Chr5:37936977 | Cre06g2239 | Cre-Chr6:30294908 | 2.20E-18 | dispersed | |
| Cre06g2239 | Cre-Chr6:30294908 | Cre11g1447 | Cre-Chr11:21715853 | 7.70E-12 | dispersed | |
| Cre11g1598 | Cre-Chr11:26382814 | Cre06g2239 | Cre-Chr6:30294908 | 1.40E-61 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 53919 | PF00010 | HLH | 1.60E-11 | No_clan | Cre | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre06g2239 | - | - | - | 0.0 |