Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2248 ATGGCGGTGGATCTCGCAGCTTTTCCGGCCAAGATGGATGATCAAACCGCCATTGAAGAAGCCGCCTCCGCCGGTTTACAGAGCATGGAGCATCTAATCCTTCTCTTATCCAAACAACAACACTCTCAAACTCTTAATAACAATCTCAATTACTCTGGCCTCACCGATTTCACCGTCTCCAAATTCAAACGATTGATTTCCCTCTTAAACCGTACCGGCCACGCTAGATTCCGCCGTGGACCCTCCGATTCCCCAAATCCCGTCCTCAATTCTCTCGATCCACCTCTCAAAACCCATTTCCCTAAACCTAATTTCTCCCCTGCTTCCAAATTCCCTGATTCTAAGGATTCCACTACCACCTCTTCTTTTGTTTCCACGATCACCGGCGACGGCAGCGTTTCTAACGGCAAGGTTGATCTCTCGGTCTTTGCGACGCCGCCGGTGTCCGGTGGTAAACCACCGTTGGCGTTGAAGAGGAAGTGCGATGATAGCTCTGGATTTGGTTGTAAGGTTCCGTCGAAGCTCTGTCACTGTGCGAAGCGAAGGAAATCTGGAGTGAAGAAGACGGTAAGAGTTCCGGCGATCAGTTCTAAGATCGCTGATATACCTTCCGATGAATACTCTTGGAGAAAGTACGGTCAAAAGCCCATCAAAGGCTCACCTTATCCTAGAGGGTATTACAGATGCAGCACCGTCAAAGGATGTCCGGCGAGGAAAAAGGTGGAAAGAGCTCGTGACGATCCGACGATGCTCCTCGTAACTTACGACGGAGATCACCGTCACCCGCACCCTACGGTGACCGATGCCAGCATACCTGTGACTCTAGAGTTTTTTCTGAAAAATAATGGGAAAAAGAAAGTCAATCATCTTGTAAAGTCAAAACTAGCCTCGGAGTTCACGAAGCGATCGCCTTGGTCCAAGTCAAACCAAAATACAATCACGTTCGGATCTCTCGTAATGGAACCTGGACGGAAATACGAGGTGGAAGGGTATCGATGTAATTTTGTTACTGTATTATATTTTATTGGAAGCTAA 1035 48.02 MAVDLAAFPAKMDDQTAIEEAASAGLQSMEHLILLLSKQQHSQTLNNNLNYSGLTDFTVSKFKRLISLLNRTGHARFRRGPSDSPNPVLNSLDPPLKTHFPKPNFSPASKFPDSKDSTTTSSFVSTITGDGSVSNGKVDLSVFATPPVSGGKPPLALKRKCDDSSGFGCKVPSKLCHCAKRRKSGVKKTVRVPAISSKIADIPSDEYSWRKYGQKPIKGSPYPRGYYRCSTVKGCPARKKVERARDDPTMLLVTYDGDHRHPHPTVTDASIPVTLEFFLKNNGKKKVNHLVKSKLASEFTKRSPWSKSNQNTITFGSLVMEPGRKYEVEGYRCNFVTVLYFIGS 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30409200 30410883 - CrPI670011_06g022480.1 Cre06g2248 501710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2248 344 Pfam Plant zinc cluster domain 158 201 IPR018872 -
Cre06g2248 344 MobiDBLite consensus disorder prediction 75 122 - -
Cre06g2248 344 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 17 286 IPR044810 GO:0003700(InterPro)
Cre06g2248 344 Pfam WRKY DNA -binding domain 205 262 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre06g2248 344 FunFam WRKY transcription factor 65 187 264 - -
Cre06g2248 344 SUPERFAMILY WRKY DNA-binding domain 201 264 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre06g2248 344 SMART WRKY_cls 203 263 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre06g2248 344 Gene3D WRKY domain 192 265 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre06g2248 344 ProSiteProfiles WRKY domain profile. 198 264 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2813 Cre-Chr5:38847898 Cre06g2248 Cre-Chr6:30409200 5.20E-70 dispersed
Cre06g2248 Cre-Chr6:30409200 Cre07g0436 Cre-Chr7:2048638 2.70E-39 dispersed
Cre06g2248 Cre-Chr6:30409200 Cre05g2205 Cre-Chr5:33756245 7.20E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53920 PF03106 WRKY 1.70E-25 CL0274 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2248 - - - 0.0