Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2259 ATGGGAGATCATCAAGATGAGGTATGCAATATCAGCTGGCTTAGCCTTGGTTTGGGATTTGGTGAATATGTCCCAAAAAAGATGCAAAAAATCAACAATAAGCAGCAGCAGCAACAACAACAACTCTCTTTCACTCTCATTCCAAAAGAAGAATTGGGTATTAACAATAACGACGACGACAACAACAACATCAATATGGAAATTGACGATGAAGCTAATTCAAGTGAAGAAGATGATCATCATTTGATGAAGAGAATTAGAAGCAATAATAATATTGTTAATTATGATCAAGATTCCTCCTTCGGAATTAGAAGATCATCATCAGATCATCATCATCAGTACACCACCAACAACAACAATATTATTACTACTAATCATAATTATAAGGGGATTAGTAGTAGTAGTGGATCAGAATTAAGGGAGAGAAAAAAGCTTAGGCTTTCCAAAGAACAATCCACTTTGCTGGAAGAAAGCTTCAAACTTCACACCACTTTGAATCCGGCTCAGAAACAGGCACTTGCCCAACAATTAAACCTCAAAACTCGACAAGTGGAAGTTTGGTTTCAAAACAGACGTGCAAGGACGAAATTGAAACAAACAGAAGTAGATTGTGAGTTTTTGAAGAAATGTTGTGAAAGATTAAACGAAGAAAACCGAAGGTTGAAGAAAGAATTGCATGAATTAAGATCCCTTAAACTTGGAGCTTCACAATTGTACATTCAGCTGCCCAAGGCGGCCACACTCACAATTTGCCCTTCATGCGACAAAATTACAAGGACGGCCGCCGCCAACGCCGCCGCCGTCGACGCTAATTCTCCGCCACAATAA 828 38.89 MGDHQDEVCNISWLSLGLGFGEYVPKKMQKINNKQQQQQQQLSFTLIPKEELGINNNDDDNNNINMEIDDEANSSEEDDHHLMKRIRSNNNIVNYDQDSSFGIRRSSSDHHHQYTTNNNNIITTNHNYKGISSSSGSELRERKKLRLSKEQSTLLEESFKLHTTLNPAQKQALAQQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSLKLGASQLYIQLPKAATLTICPSCDKITRTAAANAAAVDANSPPQ 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30499626 30501213 + CrPI670011_06g022590.1 Cre06g2259 501721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2259 275 Pfam Homeodomain 142 196 IPR001356 GO:0003677(InterPro)
Cre06g2259 275 MobiDBLite consensus disorder prediction 107 145 - -
Cre06g2259 275 Coils Coil 197 231 - -
Cre06g2259 275 SMART HOX_1 140 202 IPR001356 GO:0003677(InterPro)
Cre06g2259 275 SMART halz 198 241 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre06g2259 275 SUPERFAMILY Homeodomain-like 129 199 IPR009057 -
Cre06g2259 275 ProSitePatterns 'Homeobox' domain signature. 173 196 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cre06g2259 275 MobiDBLite consensus disorder prediction 112 135 - -
Cre06g2259 275 CDD homeodomain 142 199 IPR001356 GO:0003677(InterPro)
Cre06g2259 275 ProSiteProfiles 'Homeobox' domain profile. 138 198 IPR001356 GO:0003677(InterPro)
Cre06g2259 275 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 31 263 IPR050762 -
Cre06g2259 275 FunFam Homeobox-leucine zipper protein 18 127 203 - -
Cre06g2259 275 Gene3D - 133 203 - -
Cre06g2259 275 Pfam Homeobox associated leucine zipper 198 231 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2259 Cre-Chr6:30499626 Cre10g0999 Cre-Chr10:17069352 9.80E-40 dispersed
Cre06g2259 Cre-Chr6:30499626 Cre09g0360 Cre-Chr9:3557224 5.20E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53921 PF00046 Homeodomain 1.00E-15 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2259 K09338 - csv:101203427 380.948