Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre06g2259 | ATGGGAGATCATCAAGATGAGGTATGCAATATCAGCTGGCTTAGCCTTGGTTTGGGATTTGGTGAATATGTCCCAAAAAAGATGCAAAAAATCAACAATAAGCAGCAGCAGCAACAACAACAACTCTCTTTCACTCTCATTCCAAAAGAAGAATTGGGTATTAACAATAACGACGACGACAACAACAACATCAATATGGAAATTGACGATGAAGCTAATTCAAGTGAAGAAGATGATCATCATTTGATGAAGAGAATTAGAAGCAATAATAATATTGTTAATTATGATCAAGATTCCTCCTTCGGAATTAGAAGATCATCATCAGATCATCATCATCAGTACACCACCAACAACAACAATATTATTACTACTAATCATAATTATAAGGGGATTAGTAGTAGTAGTGGATCAGAATTAAGGGAGAGAAAAAAGCTTAGGCTTTCCAAAGAACAATCCACTTTGCTGGAAGAAAGCTTCAAACTTCACACCACTTTGAATCCGGCTCAGAAACAGGCACTTGCCCAACAATTAAACCTCAAAACTCGACAAGTGGAAGTTTGGTTTCAAAACAGACGTGCAAGGACGAAATTGAAACAAACAGAAGTAGATTGTGAGTTTTTGAAGAAATGTTGTGAAAGATTAAACGAAGAAAACCGAAGGTTGAAGAAAGAATTGCATGAATTAAGATCCCTTAAACTTGGAGCTTCACAATTGTACATTCAGCTGCCCAAGGCGGCCACACTCACAATTTGCCCTTCATGCGACAAAATTACAAGGACGGCCGCCGCCAACGCCGCCGCCGTCGACGCTAATTCTCCGCCACAATAA | 828 | 38.89 | MGDHQDEVCNISWLSLGLGFGEYVPKKMQKINNKQQQQQQQLSFTLIPKEELGINNNDDDNNNINMEIDDEANSSEEDDHHLMKRIRSNNNIVNYDQDSSFGIRRSSSDHHHQYTTNNNNIITTNHNYKGISSSSGSELRERKKLRLSKEQSTLLEESFKLHTTLNPAQKQALAQQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSLKLGASQLYIQLPKAATLTICPSCDKITRTAAANAAAVDANSPPQ | 275 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 30499626 | 30501213 | + | CrPI670011_06g022590.1 | Cre06g2259 | 501721 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre06g2259 | 275 | Pfam | Homeodomain | 142 | 196 | IPR001356 | GO:0003677(InterPro) | |
Cre06g2259 | 275 | MobiDBLite | consensus disorder prediction | 107 | 145 | - | - | |
Cre06g2259 | 275 | Coils | Coil | 197 | 231 | - | - | |
Cre06g2259 | 275 | SMART | HOX_1 | 140 | 202 | IPR001356 | GO:0003677(InterPro) | |
Cre06g2259 | 275 | SMART | halz | 198 | 241 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre06g2259 | 275 | SUPERFAMILY | Homeodomain-like | 129 | 199 | IPR009057 | - | |
Cre06g2259 | 275 | ProSitePatterns | 'Homeobox' domain signature. | 173 | 196 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cre06g2259 | 275 | MobiDBLite | consensus disorder prediction | 112 | 135 | - | - | |
Cre06g2259 | 275 | CDD | homeodomain | 142 | 199 | IPR001356 | GO:0003677(InterPro) | |
Cre06g2259 | 275 | ProSiteProfiles | 'Homeobox' domain profile. | 138 | 198 | IPR001356 | GO:0003677(InterPro) | |
Cre06g2259 | 275 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 31 | 263 | IPR050762 | - | |
Cre06g2259 | 275 | FunFam | Homeobox-leucine zipper protein 18 | 127 | 203 | - | - | |
Cre06g2259 | 275 | Gene3D | - | 133 | 203 | - | - | |
Cre06g2259 | 275 | Pfam | Homeobox associated leucine zipper | 198 | 231 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre06g2259 | Cre-Chr6:30499626 | Cre10g0999 | Cre-Chr10:17069352 | 9.80E-40 | dispersed | |
Cre06g2259 | Cre-Chr6:30499626 | Cre09g0360 | Cre-Chr9:3557224 | 5.20E-41 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53921 | PF00046 | Homeodomain | 1.00E-15 | CL0123 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre06g2259 | K09338 | - | csv:101203427 | 380.948 |