Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2261 ATGCCTCGCCGAATACTTCAAGGAACCTCTGAAGATCAGATGAAGAGCTCTTCATCACTGCTACATGCTCCAGTTTTCTTCTTCTTCCTTGGAATGCTAGCTGTGCTGGTAATATTGTTGATTCTCCTATTGATCTTTAGGAAATCTCTCAAACAAAATAAGGTGGTGAAGTTATTAAGACAAACTGGAACAACTCAAGCATCAGCAGATTTGTTGAGCGAGAACCTGCAGTCATTAAGTTACTTTGACTTTCACACACTTAGAAAGGCAACCAAGAATTTTAATCCGACAAATCTTCTAGGCCAAGGAGGATTTGGACCCGTTTATCTGGGAACACTAGAAGATGGAAGATTGGTTGCAATAAAGAAACTTTCCCTAAACAAATCCCAACAAGGAGAACCAGAATTTCTATCAGAGGTCAGACTGATAACAAGCATCCAACACAAGAACCTTGTTCGTCTACTTGGTTGTTGCTCTGATGGGCCTCAACGGCTACTCGTGTATGAATACATGGAGAACAGGAGTTTAGATCTCATAATATATGGTGGAAGTGACCAATTCCTCAACTGGAATACCAGATTGAAGATTATCAGAGGCATTGCCAAAGGGTTGCAGTACCTACATGAGGATTCCCATCTAAGAATTATTCACCGAGACATCAAAGCAAGCAACATTCTTCTTGATGACAAATTTCAACCAAAGATTGGTGATTTTGGGCTGGCCAGGTTCTTCCCTGATGACCAAGCTTACCTTAGCACTACATTTGCTGGAACTCTAGGTTACACAGCGCCGGAATATGCAATTAGGGGAGAACTGTCAGAGAAGGCAGATGTATACAGTTTTGGAGTTCTTGTGCTTGAAATCATCAGTGGCAGGAAAAACACAAATCTTTCTTTACCAACCGAAATGCAGTATCTTCCTGAATATGCATGGAAACTATATGAGAGATCTGCACTCACCGAACTAGTGGATCCAAGGATGAAGGATGGTGGATATGTGGAGAAGAATGTAGCACATGCAATTCATGTTGCTTTGTTATGCCTTCAACCACATGGCAATCTAAGACCTGCAATGTCTGAGATTGTTGCGATGCTAACATACAAATTTGAAATCGTTCAAACGCCTTTGAAACCAGCTTTCTTGGAAAGAAGGCATAGAAGGAACAAAGATCTCTCGTTGACTAATTATGCAGAAAACACTCCATCTCCTTTACAGTGA 1218 41.05 MPRRILQGTSEDQMKSSSSLLHAPVFFFFLGMLAVLVILLILLLIFRKSLKQNKVVKLLRQTGTTQASADLLSENLQSLSYFDFHTLRKATKNFNPTNLLGQGGFGPVYLGTLEDGRLVAIKKLSLNKSQQGEPEFLSEVRLITSIQHKNLVRLLGCCSDGPQRLLVYEYMENRSLDLIIYGGSDQFLNWNTRLKIIRGIAKGLQYLHEDSHLRIIHRDIKASNILLDDKFQPKIGDFGLARFFPDDQAYLSTTFAGTLGYTAPEYAIRGELSEKADVYSFGVLVLEIISGRKNTNLSLPTEMQYLPEYAWKLYERSALTELVDPRMKDGGYVEKNVAHAIHVALLCLQPHGNLRPAMSEIVAMLTYKFEIVQTPLKPAFLERRHRRNKDLSLTNYAENTPSPLQ 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30521439 30523464 + CrPI670011_06g022610.1 Cre06g2261 501723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2261 405 Gene3D Transferase(Phosphotransferase) domain 1 171 374 - -
Cre06g2261 405 Gene3D Phosphorylase Kinase; domain 1 64 170 - -
Cre06g2261 405 Pfam Protein kinase domain 97 294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g2261 405 FunFam Cysteine-rich receptor-like protein kinase 2 171 373 - -
Cre06g2261 405 SMART serkin_6 94 367 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g2261 405 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 32 388 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Cre06g2261 405 CDD STKc_IRAK 100 366 - -
Cre06g2261 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g2261 405 FunFam Cysteine-rich receptor-like protein kinase 10 59 170 - -
Cre06g2261 405 SUPERFAMILY Protein kinase-like (PK-like) 74 366 IPR011009 -
Cre06g2261 405 ProSiteProfiles Protein kinase domain profile. 94 370 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2261 Cre-Chr6:30521439 Cre11g2138 Cre-Chr11:33088320 3.00E-85 dispersed
Cre06g2261 Cre-Chr6:30521439 Cre05g2715 Cre-Chr5:38039352 5.80E-81 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64232 PF00069 Pkinase 9.30E-47 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2261 - - - 0.0