Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2263 ATGTACATTCTTATAACTGTTAGATCCACGATATCGGTTGGCTCCGACCTGATCCGACCCTCGAAATTGAGCATCGGGATGAAGAAAAGCCCCCAACATCAGTCACGTGCTAGGTTACCTCCGGGGCCCACATTCACTTCTGCCACGTCACCATCCTCCCTTCTACAGTACATGGGCGCCCTTCCCAATCCCTTCTCCTTCTTCTTCTCTCTCTTCTCTCTAGTTTTCCTCTTCACCGCCGTCTCACCCGCAACTTCTTCCACCAGCCACCGACTTCTTAAGCTTATCCTGCCCCACCCTTTAAAGGAAACTGTTTTTGTTGCTTCTCCTTCTCCGCCGCCACCGCCGTCGTTTCCTTCTGCTCCTCCTCCCGAGGAGAAGCCGGTGTACTCTTCATTCCGGCCAAGCATGGCGGTGGTGGTGGGTGTTCTGACCACCACTTTCTCCATCACGTTTCTTCTCCTTTTATACGCCAAGCACTGCAAGCGTGGGAATGCGGTGGTGGTTGGTTACTCGATGCGTCCCAATACGATGATGGGTGTTCCGAGCTTCTCGACGAGGAAGAACTCCGGCATCGACCAGGCCGTGATCGAATCGTTGCCGATTTTCCGATTTGGGTCGTTGAGTGGGCAAAAGGAAGGCCTGGAATGCGCCGTTTGTCTCAACAGATTCGAGCCGACGGAAGTTCTGAGACTTCTCCCTAAATGCAAACACGCCTTCCATGTCGAATGCGTCGATACTTGGCTCGACGCTCACTCCACTTGCCCTCTATGTCGCTACAGAGTCGACCCAGAGGACGTCTTATTAGTCGAAGACGTCAATATATTTCTCCACAACCCACCACCTCCTCCGCCACGGGGATCGAATTCCAAGGATGTTGTGTTGAACTTAGAACAGGGAAGAAGAAGCGGAAAGGCTGGATCCGGGAGAGTCTCCGGCAGACACTCGTCTGTCGGCGAGAAGAGGACAGGGGAGTCCAGTTACCGTGATCCAGCATTGTTGAGACGGTCACTCGACAGCAAGAGAACCGAAACGGTAGCTGTCGGATGCTTCGATCGGCACCGGAAGGACGGGCTACTTTTGCCGGAGGAGAAAACAAATCAGAATCAGAATCAGAATCAGAATCAGAACAGATTGGAGCACAGGATCATAGTGTCGCCGAGGCCGCCGGTACTGGTACAAGGGCAACAGAGATGGAGCGATGTACAAGCTTCGGATCTGTTGTATCTACGGTCAGAAATGATAATATCTGACAGCCGCAGATTTTCGGTAGCTTCATTACCACCGGAATTAAAGAGACAGCGACGGATGGGGATGATGGGGAAGCATGCCGGAAAAGGGACCGGGATGATGATGATGGCAGATGTGTAA 1371 52.59 MYILITVRSTISVGSDLIRPSKLSIGMKKSPQHQSRARLPPGPTFTSATSPSSLLQYMGALPNPFSFFFSLFSLVFLFTAVSPATSSTSHRLLKLILPHPLKETVFVASPSPPPPPSFPSAPPPEEKPVYSSFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVVGYSMRPNTMMGVPSFSTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLNRFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLVEDVNIFLHNPPPPPPRGSNSKDVVLNLEQGRRSGKAGSGRVSGRHSSVGEKRTGESSYRDPALLRRSLDSKRTETVAVGCFDRHRKDGLLLPEEKTNQNQNQNQNQNRLEHRIIVSPRPPVLVQGQQRWSDVQASDLLYLRSEMIISDSRRFSVASLPPELKRQRRMGMMGKHAGKGTGMMMMADV 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30529938 30531755 - CrPI670011_06g022630.1 Cre06g2263 501725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2263 456 SMART ring_2 217 258 IPR001841 -
Cre06g2263 456 CDD RING-H2_EL5-like 216 259 - -
Cre06g2263 456 MobiDBLite consensus disorder prediction 315 331 - -
Cre06g2263 456 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 114 423 - -
Cre06g2263 456 ProSiteProfiles Zinc finger RING-type profile. 217 259 IPR001841 -
Cre06g2263 456 MobiDBLite consensus disorder prediction 300 331 - -
Cre06g2263 456 Pfam Ring finger domain 216 259 IPR001841 -
Cre06g2263 456 SUPERFAMILY RING/U-box 197 264 - -
Cre06g2263 456 FunFam RING-H2 finger protein ATL43 192 266 - -
Cre06g2263 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 266 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1709 Cre-Chr6:14445970 Cre06g2263 Cre-Chr6:30529938 3.30E-42 dispersed
Cre06g1710 Cre-Chr6:14448467 Cre06g2263 Cre-Chr6:30529938 1.10E-34 dispersed
Cre06g2263 Cre-Chr6:30529938 Cre08g1074 Cre-Chr8:23864726 3.40E-21 dispersed
Cre06g2263 Cre-Chr6:30529938 Cre06g2160 Cre-Chr6:29436629 1.60E-23 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2263 K19041 - csv:101203916 632.098