Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2277 ATGGCACGCCCATCTACCCCGCCCCCCACCGCCCTCTTTCTCATTCTCATTCTCATCATCTCATTGGTGGAGCAGCTCATTGTTTCTTGCACCGCTTCTACCGATGCAGAAGCGCTTCTTAAGTTCAAGAGCTCTCTTGAAATTACCAATGATGCATTGGGGAATTGGGCTACGGGGTCGTCCCCTTGCTCCGGCGATAAGGCGAATTGGATCGGTATTCTTTGCGAGAAGGGAAATGTTTGGGGATTGAAGCTTGAGAATATGGGGCTCAAGGGGAATATTGATATTGAGTCCCTTGAAGGGGTGCCTCATTTAAGGACAATTAGTCTTATGAACAATCATTTTCAAGGGTCTTTGCCTGATGTAAAGAGACTTGGGGCATTGAAATCTTTGTATTTGTCAAGAAATCATTTCTCAGGGAACATTCCTGGGGATTCATTTTCAAGTATGTTGTCTTTGAAGAAAGTGCATTTGGCTCAGAATGAGTTGGAAGGTCAAATTCCTTGGTCTTTGGTTGAATTGCCTCGTTTGTTGGAGTTGAGGCTTGAAGGAAATAAGTTTTCTGGCCAAATTCCTCATTTTCATCAAAACACAATCAAGTCCTTTAATGTCTCTAATAATGACCAACTTCATGGCCCAATCCCACAATCCCTTTCCCACATGGATCCATCCTCCTTCTCAGGCATTGAAGGTTTATGTGGACCGCCACTTAATAAACCATGCAACACCTCAAAGATGCCATCAATTGGGAGCATTATCATGGTTTCAATAGCTGTGACATTGGCTCTGCTTGCCATTGGTGCAGGAATAGTCATCCTTAGCCGTCGGAACCAATCGTCGTCTAACGAAGAGGATCCAGCCCATGGCAAATCTCCATGTGCTAGTGAGTTAGATCCGGGAGTCGGGTCGAAGTCACCGGACCATGGTTCCAGCCACGGAAGCGGGTCGGGGAAACGGTCAGCCGAGAGTGCTAAATTGTCATTTGTAAGAGAGGACTCAGAGAAGTTTGATTTATCAGATTTGCTTAAAGCCTCTGCAGAAATCCTAGGAAGTGGGTGCTTTGGTTCTTCTTACAAGGCAGCCTTGACCAATGGACCTGTCATGGTGGTAAAGAGGTTTAAGCAAATGAACAATGTGGATAGAGAGGAATTCCAAGAACATATGAGAAGAATTGGAAGATTGAAACACCCCAATTTGCTTCCTCTTGTGGCCTACTACTACAAAAAGGAAGAAAAACTTCTCATAACAAACTATGTTGAGAAAGGCAGCTTGGCTGTTCAACTTCATGGACACCAAGCTGTGGGTCAACCAGCCCTGGAATGGCCTGCAAGGTTGAAGATCATCAAGGGCATTGGAAAAGGTCTTAGGTATCTGTACAGTGAGCTTCCAAGTTTGATAACCCCACATGGCCATCTCAAGTCTTCAAATGTGCTTCTTAAGGCGAATTACGAGCCGCTTCTTTCGGACTACGGCCTGATACCGGTCGTGAACCAAGAGCATGCTCATGAGCTAATGGTGGCTTACAAATCGCCGGAGTATTCGCAACAAGGTCGCATCACAAAGAAGACAGATGTGTGGTGCTTTGGGCTGTTGATCCTAGAGATTCTAACAGGGAAATTCCCAGCTAACTTTTTGCATCAGAACAAGAGTGGTGATGAGGAAGATTTAGCAAGTTGGGTCAAAACCATTCCTGAAAAAGAATGGAACAGCCAAGTGTTTGACAAAGAAATGGGACCAACCAAGAGCAGTGAGGGTGAAATGTTGAAACTTCTCAGGATTGCAATGGCGTGTTGCGAAAGCGACTTCGAGAAGCGGCTGGATTTACGAGAAGTCGTGGAGAAGATTGAGGAAGTAAAAGAAAAAGATGGGGATGAAGATTTCTATTCTTCATATGCAAGTGAAGCTGATATTAGATCTTCAAGAGGATTATCTGATGAACTCAACTTCACCATGTGA 1956 44.79 MARPSTPPPTALFLILILIISLVEQLIVSCTASTDAEALLKFKSSLEITNDALGNWATGSSPCSGDKANWIGILCEKGNVWGLKLENMGLKGNIDIESLEGVPHLRTISLMNNHFQGSLPDVKRLGALKSLYLSRNHFSGNIPGDSFSSMLSLKKVHLAQNELEGQIPWSLVELPRLLELRLEGNKFSGQIPHFHQNTIKSFNVSNNDQLHGPIPQSLSHMDPSSFSGIEGLCGPPLNKPCNTSKMPSIGSIIMVSIAVTLALLAIGAGIVILSRRNQSSSNEEDPAHGKSPCASELDPGVGSKSPDHGSSHGSGSGKRSAESAKLSFVREDSEKFDLSDLLKASAEILGSGCFGSSYKAALTNGPVMVVKRFKQMNNVDREEFQEHMRRIGRLKHPNLLPLVAYYYKKEEKLLITNYVEKGSLAVQLHGHQAVGQPALEWPARLKIIKGIGKGLRYLYSELPSLITPHGHLKSSNVLLKANYEPLLSDYGLIPVVNQEHAHELMVAYKSPEYSQQGRITKKTDVWCFGLLILEILTGKFPANFLHQNKSGDEEDLASWVKTIPEKEWNSQVFDKEMGPTKSSEGEMLKLLRIAMACCESDFEKRLDLREVVEKIEEVKEKDGDEDFYSSYASEADIRSSRGLSDELNFTM 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30701826 30704281 + CrPI670011_06g022770.1 Cre06g2277 501739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2277 651 Gene3D Phosphorylase Kinase; domain 1 310 418 - -
Cre06g2277 651 Pfam Protein tyrosine and serine/threonine kinase 347 615 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g2277 651 SUPERFAMILY L domain-like 31 221 - -
Cre06g2277 651 Gene3D Transferase(Phosphotransferase) domain 1 419 637 - -
Cre06g2277 651 FunFam Nuclear pore complex protein NUP107 32 193 - -
Cre06g2277 651 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 30 620 IPR046959 -
Cre06g2277 651 Pfam Leucine rich repeat 128 187 IPR001611 GO:0005515(InterPro)
Cre06g2277 651 Pfam Leucine rich repeat N-terminal domain 33 75 IPR013210 -
Cre06g2277 651 FunFam pollen receptor-like kinase 1 312 418 - -
Cre06g2277 651 SUPERFAMILY Protein kinase-like (PK-like) 347 616 IPR011009 -
Cre06g2277 651 Gene3D Ribonuclease Inhibitor 148 242 IPR032675 -
Cre06g2277 651 FunFam Pollen receptor-like kinase 1 419 629 - -
Cre06g2277 651 MobiDBLite consensus disorder prediction 307 321 - -
Cre06g2277 651 MobiDBLite consensus disorder prediction 280 324 - -
Cre06g2277 651 Gene3D Ribonuclease Inhibitor 34 147 IPR032675 -
Cre06g2277 651 ProSiteProfiles Protein kinase domain profile. 343 628 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2277 Cre-Chr6:30701826 Cre07g1833 Cre-Chr7:33691522 7.50E-123 dispersed
Cre05g2802 Cre-Chr5:38740761 Cre06g2277 Cre-Chr6:30701826 7.40E-145 transposed
Cre08g1193 Cre-Chr8:25204233 Cre06g2277 Cre-Chr6:30701826 4.70E-135 transposed
Cre10g1085 Cre-Chr10:21463184 Cre06g2277 Cre-Chr6:30701826 1.30E-87 transposed
Cre01g1386 Cre-Chr1:27109836 Cre06g2277 Cre-Chr6:30701826 3.00E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64233 PF07714 PK_Tyr_Ser-Thr 2.30E-30 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2277 K28077 - csv:101213261 1102.81