Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2294 ATGAGAAGATCTTCCTCCATAGCTTCCTCCTTCCTCTCCCGCTCAATCTGCACCTCTCATGGCGCCGCTGCTCTTTCCTCCTCCGCCACCTCCAATCACCGTCTTCTCCAAGCCGCGCTCTTCAGTTCCGGCCCCCACCCCCACCGCCGCTGGTTCTCTCTCCTCGATTCCGTATCCGGTGGCTCTACCCGAGCTTTGTCGCTTGGCGTCGTTGGGACTGTTGCTTCTCTAGCCGCTGCTGTTTCCATGTCCCAGGAGGTTTATGCGAAGGAACCCTTGCGCCAGGAGTTGGTTCCCAAGGAGGTCGTGCTCTATCAATACGAAGCGTGTCCGTTTTGTAATAAAGTTAAAGCTTTTCTTGACTACTACGATATTCCGTACAAAGTTGTCGAGGTTAATCCATTTAGTAAGAAAGAAATTAAATGGTCGGACTATAAGAAGGTGCCAATACTGGTAGTTGATGGTGAACAGTTGGTTGACTCGTCAGCCATTATTGACCAGTTGAGCCAGAAGGTTTTGTCAGATAAGAATTCTTCTTCCGTCTCTGAAGATGATGAAGAGACAAAGTGGCGTCGATGGGTAGATAATCACTTGGTACATGTCTTGTCACCAAACATATATCGAAATACTTCCGAAGCTCTTGAATCATTTGACTACATTGCTAGTAATGGTAATTTTGGCTTTGCTGAAAAGATTACTGTCAAGTATGCCGGAGCCGCTGCTATGTACTTTGTGTCAAAGAAACTAAAGAAGAAATATAATATTACCGATGAGCGTGCAGCATTGTATGAAGCAGCAGAAACGTGGGTAGATGCTTTGGCTGGACGGGACTTCCTAGGAGGCTCAAAACCTAATCTAGCTGATCTTGCGGTGTTCGGGGTGTTAAGACCCATCCGTTACTTGAGGTCTGGTAAAGACATGGTGGAGCATACACGGATCGGTGAATGGTACACCAGAATGGAGAGCACTGTTGGAGACTCCTCCAGGATCAGATCCTAA 999 47.55 MRRSSSIASSFLSRSICTSHGAAALSSSATSNHRLLQAALFSSGPHPHRRWFSLLDSVSGGSTRALSLGVVGTVASLAAAVSMSQEVYAKEPLRQELVPKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPFSKKEIKWSDYKKVPILVVDGEQLVDSSAIIDQLSQKVLSDKNSSSVSEDDEETKWRRWVDNHLVHVLSPNIYRNTSEALESFDYIASNGNFGFAEKITVKYAGAAAMYFVSKKLKKKYNITDERAALYEAAETWVDALAGRDFLGGSKPNLADLAVFGVLRPIRYLRSGKDMVEHTRIGEWYTRMESTVGDSSRIRS 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30893537 30897185 + CrPI670011_06g022940.1 Cre06g2294 501756

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2294 332 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 100 176 IPR004045 -
Cre06g2294 332 CDD GST_N_mPGES2 101 172 - -
Cre06g2294 332 PANTHER MICROSOMAL PROSTAGLANDIN E SYNTHASE-2 22 331 - GO:0005739(PANTHER)|GO:0050220(PANTHER)
Cre06g2294 332 Pfam Glutathione S-transferase, N-terminal domain 104 171 IPR004045 -
Cre06g2294 332 Pfam Glutathione S-transferase, C-terminal domain 258 319 - -
Cre06g2294 332 ProSitePatterns Glutaredoxin active site. 104 120 IPR011767 -
Cre06g2294 332 ProSiteProfiles Glutaredoxin domain profile. 90 188 - -
Cre06g2294 332 SFLD Prostaglandin E synthase like.1 62 330 IPR034334 GO:0050220(InterPro)
Cre06g2294 332 CDD GST_C_mPGES2 183 325 IPR034335 -
Cre06g2294 332 SFLD Prostaglandin E synthase like 62 330 - -
Cre06g2294 332 Gene3D - 180 330 - -
Cre06g2294 332 Gene3D Glutaredoxin 93 175 - -
Cre06g2294 332 SUPERFAMILY Thioredoxin-like 101 198 IPR036249 -
Cre06g2294 332 SUPERFAMILY GST C-terminal domain-like 182 324 IPR036282 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2294 K05309 - - csv:101221439 577.785
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2294 Cre-Chr6:30893537 Cre08g1362 Cre-Chr8:26664275 5.40E-101 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g197 . . Bda06g00822 Bda15g00512 Bpe12g00695 . . Bma12g01245 . . Cma10g00331 Cma11g00316 Car10g00313 Car11g00291 . . Cpe04g01366 Bhi02g00150 Tan09g1812 . . Hepe09g0396 . . Cla06g01416 Cam06g1569 Cec06g1629 Cco06g1621 Clacu06g1531 Cmu06g1485 Cre06g2294 . . . Cone19ag0335 . . . . Blo13g00171 Blo15g00058 . . Bpe07g01049 . . Bma08g00057 . Cmo10g00357 . . . . . . . . . . . . . . . . . . . . . Lsi06g01278 Csa01g00439 Chy02g02306 Cme02g01677
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001449 3 2 2 3 3 2 4 2 2 2 2 2 4 2 2 3 2 2 3 2 2 2 2 2 2 2 2 3 4 2 72