Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2297 ATGCCGGATACACCAACATCGCCGAAGAGCGGTGGCCGTCTGGTGCTAATGGAGAATCTGCTCGGACTTCTCCGTATTCGCATCATTCGTGGTGTCAATCTTGCTGTTCGTGATGTTCGCAGTAGTGATCCTTATGTTGTCGTCAAGATGGGAAAGCAAAAACTGAAGACAAGGGTGATAAAGAAGGATGTTAATCCTGTATGGAATGAAGATCTAACTCTTTCTGTCAGTGATCCGAATCTTCCAATTAAGCTGACCGTTTACGATCACGACACATTTAGCAAGGATGATAAAATGGGATATGCTGAGTTCGATATCAAAGCATTTATGGAAGCTCTGAAGATGAACTTGAAAAATCTTCCCAGTGGAACTACAATCTCACGAATGCTACCGGCCAGGCAAAACTGTCTCGCTGAAGAGAGCTGTGTCGTCTGGAAAGATGGTAAAGTAGTCCAAGATATCTACCTTAGATTGAAAAATGTCGAATGCGGAGAAGTCGAAATTCAGTTGCAGTGGATTGATCTTCCGAACCCCAAAGGCTGA 543 44.01 MPDTPTSPKSGGRLVLMENLLGLLRIRIIRGVNLAVRDVRSSDPYVVVKMGKQKLKTRVIKKDVNPVWNEDLTLSVSDPNLPIKLTVYDHDTFSKDDKMGYAEFDIKAFMEALKMNLKNLPSGTTISRMLPARQNCLAEESCVVWKDGKVVQDIYLRLKNVECGEVEIQLQWIDLPNPKG 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30918642 30920907 + CrPI670011_06g022970.1 Cre06g2297 501759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2297 180 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 17 178 IPR044562 -
Cre06g2297 180 Gene3D C2 domain 18 179 IPR035892 -
Cre06g2297 180 CDD C2_ArfGAP 21 164 - -
Cre06g2297 180 SMART C2_3c 23 118 IPR000008 -
Cre06g2297 180 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 22 166 IPR035892 -
Cre06g2297 180 ProSiteProfiles C2 domain profile. 8 119 IPR000008 -
Cre06g2297 180 Pfam C2 domain 22 109 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1019 Cre-Chr1:16502149 Cre06g2297 Cre-Chr6:30918642 1.20E-33 dispersed
Cre04g2119 Cre-Chr4:38444297 Cre06g2297 Cre-Chr6:30918642 8.80E-35 dispersed
Cre06g2297 Cre-Chr6:30918642 Cre09g1896 Cre-Chr9:37696717 2.40E-55 dispersed
Cre05g1294 Cre-Chr5:13439096 Cre06g2297 Cre-Chr6:30918642 2.50E-67 transposed
Cre07g0983 Cre-Chr7:11736647 Cre06g2297 Cre-Chr6:30918642 3.30E-49 transposed
Cre01g1397 Cre-Chr1:27232934 Cre06g2297 Cre-Chr6:30918642 1.20E-73 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2297 - - - 0.0