Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2306 ATGGGGAGTGGAACTCTCGTGGACGGTGTTCGTCGCTGGTTTCAACGTCGCACTTCTTCTTCTTCTTCCACTTCTACTTCTAATTTTGGTTCTAGTTCTGATTCTTCTGATCCTAATCTCAATTACCCTAATCACCATAAGTTTGACCATGTTGATAATGGTGGTGTTAATGGTGACCAATTGTTGAGTAGCGATTTACGCGCCCAATCAACCATTACCCACAAACGCAAACCTCTAAGGAAACAACCCCAACTTGGAGGAGAAGGGATTCTTGAGCAATTACCTGAGGAGGAGGACGACGATCTTGATTACTCTGCCTTGAAGCTCATCAAAGTTCCTAAACGAACAAATCACTTCAGACATCCTCCTCCTCCTGCTTTAATGGACTCCCACAAGAAGGGTGGGTTGGAAACAGAATTTTTCACAGAGTATGGAGAGGCCAGCAGATATCAGGTTCAAGAAATAATCGGTAAAGGCAGCTATGGGGTTGTCGGTTCCGCCGTTGATACCCATACTGATGAGAAGGTTGCAATTAAGAAAATTAATGATGTTTTTGAGCATGTTTCTGATGCCACAAGGATTTTAAGAGAAATTAAACTCCTACGGCTGCTCCGTCATCCAGATATAGTAGAAATAAAGCACATTATGCTTCCTCCTTCACGGAGAGAATTCAGAGATATTTATGTTGTTTTTGAATTGATGGAATCTGACCTTCACCAAGTAATTAAGGCCAATGATGATCTCACTCCTGAGCATCATCAGTTTTTCTTGTACCAGCTTCTTCGTGGTCTGAAATATATTCATACAGCAAATGTATTTCATCGTGATTTAAAGCCCAAAAACATTTTAGCTAATGCCGACTGCAAACTGAAAATTTGTGATTTTGGACTTGCTCGTGTATCATTTAATGATGCACCATCTGCTATTTTCTGGACTGACTATGTTGCGACTCGGTGGTATCGTGCTCCTGAACTTTGTGGCTCTTTTTTCTCAAAATACACTCCTGCAATTGATATTTGGAGCATTGGATGCATATTTGCGGAAATGCTCACTGGAAAACCGCTGTTTCCTGGGAAAAATGTGGTGCACCAACTGGATCTGATGACTGATGTGCTTGGCACACCTTCCGCTGAGTCCATTGCTAGGATTCGGAATGAAAAGGCAAGAAGATACCTTAGTAACATGAGGAGAAAGCAGCCTGTTCCTCTCACACAAAAGTTTCCCAATGCCGATCCCTTGGCTCTCCGCTTGCTTCAACGCCTGCTTGCATTTGATCCCAAAGATCGTCCCACTGCTGAAGAGGCATTAGCTGATCCGTATTTTCATGGTTTGGCTAACGTGGATCGGGAACCATCAACACAACCAATTTCAAAACTTGAGTTTGAATTTGAGAGAAGAAAGTTAACAAAAGATGATGTTAGAGAATTAATTTATCGAGAGATCTTGGAGTATCATCCTCAGATGCTACAGGAATATCTCCGCAGTGGAGAACAAACAAGCTTCATGTACCCAAGTGGGGTTGATCGCTTCAAACGCCAGTTTGCACATCTAGAGGAACATTATGGCAAGGGTGAAAGAAGTACTCCACTTCAAAGACAGCATGCTTCATTGCCCAGGGAAAGGGTTTGTGCACCAAAAGATGAATCCGAACAACACAATGATTTAGAAGGAAGAAATGTTGCTACATCTCTTCAAAGTCCCCCAAAGTCGCAAGGAGATGGTTCCGAAAATGCAAACGGTAATGAACAAAATGGACCAAACAAGCCAAATTACAGTGCTCGTAGCTTGTTGAAGAGTGCCAGCATTAGTGCCTCTAAATGTATAGATGTTAAACCAAGAAAAGACCTAGAGGAGGAACCGATTACCGAGATGAATGACGAGGCAATTGATGGATTGTCTCATAAGGACATTTTGGCTACAAGGCAAAGTGTAGCGAAGTTTCTGAAGTCAGGTTGTTACCCTCGTGTAGCATGA 1974 42.45 MGSGTLVDGVRRWFQRRTSSSSSTSTSNFGSSSDSSDPNLNYPNHHKFDHVDNGGVNGDQLLSSDLRAQSTITHKRKPLRKQPQLGGEGILEQLPEEEDDDLDYSALKLIKVPKRTNHFRHPPPPALMDSHKKGGLETEFFTEYGEASRYQVQEIIGKGSYGVVGSAVDTHTDEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLMTDVLGTPSAESIARIRNEKARRYLSNMRRKQPVPLTQKFPNADPLALRLLQRLLAFDPKDRPTAEEALADPYFHGLANVDREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLRSGEQTSFMYPSGVDRFKRQFAHLEEHYGKGERSTPLQRQHASLPRERVCAPKDESEQHNDLEGRNVATSLQSPPKSQGDGSENANGNEQNGPNKPNYSARSLLKSASISASKCIDVKPRKDLEEEPITEMNDEAIDGLSHKDILATRQSVAKFLKSGCYPRVA 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31024317 31029940 + CrPI670011_06g023060.1 Cre06g2306 501768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2306 657 ProSitePatterns Protein kinases ATP-binding region signature. 156 180 IPR017441 GO:0005524(InterPro)
Cre06g2306 657 MobiDBLite consensus disorder prediction 539 555 - -
Cre06g2306 657 MobiDBLite consensus disorder prediction 520 593 - -
Cre06g2306 657 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 147 482 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cre06g2306 657 SMART serkin_6 150 441 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g2306 657 MobiDBLite consensus disorder prediction 16 42 - -
Cre06g2306 657 Pfam Protein kinase domain 150 441 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g2306 657 Gene3D Transferase(Phosphotransferase) domain 1 236 464 - -
Cre06g2306 657 FunFam Mitogen-activated protein kinase 465 487 - -
Cre06g2306 657 ProSiteProfiles Protein kinase domain profile. 150 441 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g2306 657 MobiDBLite consensus disorder prediction 16 61 - -
Cre06g2306 657 FunFam Mitogen-activated protein kinase 236 464 - -
Cre06g2306 657 FunFam Mitogen-activated protein kinase 139 244 - -
Cre06g2306 657 Gene3D Phosphorylase Kinase; domain 1 166 487 - -
Cre06g2306 657 CDD STKc_TDY_MAPK 149 486 - -
Cre06g2306 657 ProSitePatterns MAP kinase signature. 185 288 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g2306 657 MobiDBLite consensus disorder prediction 556 593 - -
Cre06g2306 657 SUPERFAMILY Protein kinase-like (PK-like) 146 446 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1328 Cre-Chr6:7231211 Cre06g2306 Cre-Chr6:31024317 1.90E-207 dispersed
Cre06g2306 Cre-Chr6:31024317 Cre07g1403 Cre-Chr7:28935437 3.50E-184 dispersed
Cre03g1273 Cre-Chr3:18957520 Cre06g2306 Cre-Chr6:31024317 1.30E-209 transposed
Cre07g1026 Cre-Chr7:13598636 Cre06g2306 Cre-Chr6:31024317 1.70E-207 transposed
Cre01g1407 Cre-Chr1:27341812 Cre06g2306 Cre-Chr6:31024317 9.40E-209 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64235 PF00069 Pkinase 1.90E-68 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2306 - - - 0.0