Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2308 ATGCAAATGGCTGGTGGTGATCAAGATATGGCAGTTCACTCTCTTGCATCTAAACTTTCTGTAGTTTCAGAACATGAACCTGAACAATGTGGCAATAATAATAATCCCACTAATAATCACCAACAAAGACCTTGCTTTGATCCTTCTCTTGTTTCTCCCAAGGCCGTGCCGCCTATCTCGGTGGCTGCGGAGAGTGATCAAGCTCTCCGTCGACCTCGGGGGCGGCCAGCCGGGTCCAAAAACAAGCCAAAACCACCCATTATTGTTACCCGAGATAGCGCAAATGCCCTCCGAGCTCATGCCATTGAGGTTAGCTCTGGCTGTGATGTTAATGAGAGCCTCTCCAACTTCGCTCGGAGAAAGCAGCGTGGTGTTTGCATTCTTAGTGGTAGCGGGTGTGTCACTAATGTCACGCTCCGCCAGGCTGCCTCCTCTGGCGCTATTGTCACTCTCCATGGCCGCTTTGAGATTCTTTCCATGCTGGGGTCGATCTTGCCACCACCGGCACCGTCGGGAATCACTGGCCTGACAATTTACTTAGCCGGTGCACAAGGGCAGGTGGTCGGTGGTGTTGTTGTGGGCGCGCTCATTGCTTCCGGTCCAGTCGTGATCATGGCGGCGACATTCATGAACGCGACATTCGACCGCCTACCATCGGACGACGAAGAAGTGGCAGCCGCCATGCATAGTCAACATTACGGCCAAAATGGGCGGAGCCACCACCACCTGGATGTTTCGGATCTGTATGGAGTGCCACAGAATTTGATCACCAATAGTAGTCTTCCGCCGGAATTATACTCTTGGGCGGCGGCTGGCAGAACCATGTCAAAGACTTAA 837 52.69 MQMAGGDQDMAVHSLASKLSVVSEHEPEQCGNNNNPTNNHQQRPCFDPSLVSPKAVPPISVAAESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGRFEILSMLGSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPSDDEEVAAAMHSQHYGQNGRSHHHLDVSDLYGVPQNLITNSSLPPELYSWAAAGRTMSKT 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31037335 31038349 + CrPI670011_06g023080.1 Cre06g2308 501770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2308 278 ProSiteProfiles PPC domain profile profile. 94 232 IPR005175 -
Cre06g2308 278 CDD DUF296 98 180 IPR005175 -
Cre06g2308 278 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 63 239 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre06g2308 278 FunFam AT-hook motif nuclear-localized protein 97 224 - -
Cre06g2308 278 Pfam Plants and Prokaryotes Conserved (PCC) domain 98 210 IPR005175 -
Cre06g2308 278 MobiDBLite consensus disorder prediction 1 87 - -
Cre06g2308 278 SUPERFAMILY AF0104/ALDC/Ptd012-like 94 226 - -
Cre06g2308 278 Gene3D - 97 233 - -
Cre06g2308 278 MobiDBLite consensus disorder prediction 26 46 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2308 Cre-Chr6:31037335 Cre09g2174 Cre-Chr9:40811400 8.30E-63 dispersed
Cre06g2308 Cre-Chr6:31037335 Cre02g2008 Cre-Chr2:33535797 3.90E-60 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2308 - - - 0.0