Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2312 ATGATGTGTGTGTTGGGGAAAGAAGCTGAGACTCTGGATCATACCTTTATTCGTTGCACGAGGTCAAAGGGCTTATGGAGTTTGATTGTCTCGACTGTGCTGAGATCTGTTTCTATTTATATTACCATTCAATGTGTGTGCGTGGAGATGGCGCTTATGGAGTTTGATTTTCTCGACTGTGCTGAGACCTGTTTCTATTTATATTACCATTCAATGTGTGCGCGTGGAGATGGCGTCATCGTTGTCGAGAGGAGAATTCAAACTATTCTGTATGGGTTACTGGTGATTTGGTCCGATAGGAATATGGTTAATATGAGAAATCTGATTGGGGAGGTGGTTTCTGCCAAGTTGATCGGGATTCAAATTGAATGTCGACGCATCGTGTGTATCTCCATCGAGTATTGGGCTGGGTGCTATGGTTCGAGATCACTGAGGGGTTGCAATGTTCCTAGGGTTCTCCAAGTTACAACCGCCTATAGCCGGTCGTCTTCCCAAAACCCTAATTTTCTCGACTATATATACCTTCTCATCTTCCTCGCTTCCTCCTCTATCGCTCACAAATTTACAATCTTTTACACAGCCAAAGGCGTAGAACCAAAGCAGAGCTCAAAAATGGCGGAGGGGCTTGTTCTGCGAGGCACAATGAGGGCTCACACCGACATGGTGACGGCCATCGCCACTCCCATCGACAATTCCGATATGATTGTCACCTCTTCCCGTGACAAATCCATCATCTTGTGGCGTCTCACCAAGGAAGAGAAGACCTACGGCGTCCCTCAACGAAGGCTCAATGGTCACTCCCACTTTGTTCAAGATGTTGTCCTCTCATCCGACGGTCAGTTCGCCCTATCTGGCTCCTGGGACGGCGAGCTCCGCCTCTGGGACCTTGCTACCGGCGTTACATCACGTCGATTCGTTGGGCATTCGAAAGATGTTCTCTCTGTCGCCTTCTCCATCGACAATCGTCAGATCGTCTCGGCCTCTCGTGACCGAACGATCAAGCTATGGAACACTCTCGGTGAGTGCAAGTACACAATCCAGGACGGTGATGCTCACTCTGACTGGGTTAGTTGTGTTAGATTTAGCCCTAACACGCTCCAGCCAACTATTGTTTCGGCGTCATGGGACAAGACCGTGAAGGTCTGGAACTTGACCAATTGCAAGTTGAGAGTTACTCTCGCTGGTCACGCTGGTTATGTCAACACAGTGGCTGTTTCGCCGGATGGGTCTCTGTGCGCTAGCGGAGGCAAAGACGGAGTGATTTTGCTGTGGGATTTGGCTGAGGGTAAGAGGCTCTATTCCTTGGATGCCGGATCAATTATTCATGCTCTTTGTTTCAGCCCCAACAGGTACTGGCTCTGTGCTGCAACTGAGAGCAGTATTAAGATCTGGGATTTGGAGAGCAAAAGTATTGTGGAAGACTTGAAAGTCGATTTAAAAACCGAGGCGGAGAAAACTGATGACACCCATGCTGCTACTGCCAACAAGATTAAGGTTATTTACTGCACAAGTTTGAGCTGGAGCGCAGATGGGAGCACATTGTTTGGTGGCTACACAGATGGAGTCGTCAGAGTTTGGGGAATTGGTCGTTACTAG 1596 48.5 MMCVLGKEAETLDHTFIRCTRSKGLWSLIVSTVLRSVSIYITIQCVCVEMALMEFDFLDCAETCFYLYYHSMCARGDGVIVVERRIQTILYGLLVIWSDRNMVNMRNLIGEVVSAKLIGIQIECRRIVCISIEYWAGCYGSRSLRGCNVPRVLQVTTAYSRSSSQNPNFLDYIYLLIFLASSSIAHKFTIFYTAKGVEPKQSSKMAEGLVLRGTMRAHTDMVTAIATPIDNSDMIVTSSRDKSIILWRLTKEEKTYGVPQRRLNGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLATGVTSRRFVGHSKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLTNCKLRVTLAGHAGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHALCFSPNRYWLCAATESSIKIWDLESKSIVEDLKVDLKTEAEKTDDTHAATANKIKVIYCTSLSWSADGSTLFGGYTDGVVRVWGIGRY 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31076650 31079510 - CrPI670011_06g023120.1 Cre06g2312 501774

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2312 531 SUPERFAMILY WD40 repeat-like 180 528 IPR036322 GO:0005515(InterPro)
Cre06g2312 531 ProSiteProfiles Trp-Asp (WD) repeats profile. 393 434 IPR001680 GO:0005515(InterPro)
Cre06g2312 531 ProSitePatterns Trp-Asp (WD) repeats signature. 412 426 IPR019775 -
Cre06g2312 531 CDD WD40 211 526 - -
Cre06g2312 531 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 393 430 - -
Cre06g2312 531 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 305 337 - -
Cre06g2312 531 ProSitePatterns Trp-Asp (WD) repeats signature. 370 384 IPR019775 -
Cre06g2312 531 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 215 249 - -
Cre06g2312 531 ProSitePatterns Trp-Asp (WD) repeats signature. 282 296 IPR019775 -
Cre06g2312 531 ProSiteProfiles Trp-Asp (WD) repeats profile. 305 337 IPR001680 GO:0005515(InterPro)
Cre06g2312 531 ProSiteProfiles Trp-Asp (WD) repeats profile. 215 257 IPR001680 GO:0005515(InterPro)
Cre06g2312 531 PANTHER RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 201 528 IPR045223 GO:0001934(PANTHER)|GO:0005080(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0043022(PANTHER)|GO:0043022(InterPro)|GO:0045182(InterPro)|GO:0072344(PANTHER)
Cre06g2312 531 FunFam Receptor for activated C kinase 1 212 531 - -
Cre06g2312 531 ProSiteProfiles Trp-Asp (WD) repeats profile. 503 531 IPR001680 GO:0005515(InterPro)
Cre06g2312 531 Gene3D - 208 531 IPR015943 GO:0005515(InterPro)
Cre06g2312 531 PRINTS G protein beta WD-40 repeat signature 412 426 IPR020472 -
Cre06g2312 531 PRINTS G protein beta WD-40 repeat signature 370 384 IPR020472 -
Cre06g2312 531 PRINTS G protein beta WD-40 repeat signature 324 338 IPR020472 -
Cre06g2312 531 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 304 IPR001680 GO:0005515(InterPro)
Cre06g2312 531 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 299 - -
Cre06g2312 531 SMART WD40_4 339 383 IPR001680 GO:0005515(InterPro)
Cre06g2312 531 SMART WD40_4 208 248 IPR001680 GO:0005515(InterPro)
Cre06g2312 531 SMART WD40_4 386 425 IPR001680 GO:0005515(InterPro)
Cre06g2312 531 SMART WD40_4 256 295 IPR001680 GO:0005515(InterPro)
Cre06g2312 531 SMART WD40_4 298 337 IPR001680 GO:0005515(InterPro)
Cre06g2312 531 SMART WD40_4 493 527 IPR001680 GO:0005515(InterPro)
Cre06g2312 531 SMART WD40_4 428 465 IPR001680 GO:0005515(InterPro)
Cre06g2312 531 ProSiteProfiles Trp-Asp (WD) repeats profile. 349 392 IPR001680 GO:0005515(InterPro)
Cre06g2312 531 Pfam WD domain, G-beta repeat 341 383 IPR001680 GO:0005515(InterPro)
Cre06g2312 531 Pfam WD domain, G-beta repeat 302 337 IPR001680 GO:0005515(InterPro)
Cre06g2312 531 Pfam WD domain, G-beta repeat 502 526 IPR001680 GO:0005515(InterPro)
Cre06g2312 531 Pfam WD domain, G-beta repeat 430 465 IPR001680 GO:0005515(InterPro)
Cre06g2312 531 Pfam WD domain, G-beta repeat 388 425 IPR001680 GO:0005515(InterPro)
Cre06g2312 531 Pfam WD domain, G-beta repeat 212 247 IPR001680 GO:0005515(InterPro)
Cre06g2312 531 Pfam WD domain, G-beta repeat 258 295 IPR001680 GO:0005515(InterPro)
Cre06g2312 531 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 349 386 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2312 K14753 - - csv:101216713 663.685
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g236 Blo04g00842 Blo16g00123 . Bda15g00506 Bpe12g00703 Bpe13g00370 Bma06g00058 . . . Cma10g00321 Cma11g00302 Car10g00301 Car11g00276 Sed08g2632 . Cpe04g01381 Bhi02g00121 Tan09g1843 Cmetu09g0775 . Hepe09g0374 . . Cla06g01433 Cam06g1587 Cec06g1647 Cco06g1639 Clacu06g1548 Cmu06g1503 Cre06g2312 Cone2ag0750 . . . . . . . Blo13g00177 . . . . Bpe15g00520 Bma03g00908 Bma08g00007 . Cmo10g00344 Cmo11g00305 . . . . . . . . . . . . . . . . . . . . Lsi06g01300 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005819 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 0 39