Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2315 ATGCAAAGATCACCAACAATGGCAGAGGCAAAGATAATTGGGTCAGCTTCAAGCCTATTCTGCATAAGGGTTGAATGGGCCTTGAAGCTCAAAGGAATTGAGTACGAGTACATACCTGAAGACTTGAGAAACAAAAGTGAGTTGCTTCTCAAGTCCAACCCTGTGCTCAAGAAAATACCTGTGCTTTTGCACAATGACAAAGCCATCTCCGAGTCGCTTCTCATTATCGAATACATCGACGAGACGTGGAAGGAGAACCCAATATTGCCTGAAGATCCATTTGACAGAGCCAATGCTCGCTTCTGGGCTAAGTTTTTAGATGAGAAGGGCGTGTTCGGTGCGTGGGAAGCTTGCCAGGCTGAAGGAGAAGAGAAGGAGAAGGCTGTGGAGGCTGCAGTACAAAATTTGGGACTGCTTGACAAAGAAATCCAAGGAAAGAAATTCTTTGGAGGAGAGCAAATTGGTTATCTAGATTTAGCTGCAGGTTGGATCTGCCACTGGCTCAATGTTCTGGATGAAGTGGGAGAAATGAATGTGTTTGACAAAGAGAGGGTCCCATCCCTTCATGAATGGGCTCAAAATTTCATCCAGATTCCAGTTATCAAAGAATCCCTTCCACCCAGAGAAAATCTTGTCAACTACTTCAAGGGGAGTCTGAGCTACGTCCGGTCCTTAGCTGCAAAAAAGTAA 690 45.07 MQRSPTMAEAKIIGSASSLFCIRVEWALKLKGIEYEYIPEDLRNKSELLLKSNPVLKKIPVLLHNDKAISESLLIIEYIDETWKENPILPEDPFDRANARFWAKFLDEKGVFGAWEACQAEGEEKEKAVEAAVQNLGLLDKEIQGKKFFGGEQIGYLDLAAGWICHWLNVLDEVGEMNVFDKERVPSLHEWAQNFIQIPVIKESLPPRENLVNYFKGSLSYVRSLAAKK 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31098298 31099593 - CrPI670011_06g023150.1 Cre06g2315 501777

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2315 229 SUPERFAMILY Thioredoxin-like 12 108 IPR036249 -
Cre06g2315 229 Pfam Glutathione S-transferase, C-terminal domain 124 192 - -
Cre06g2315 229 FunFam Tau class glutathione S-transferase 5 91 - -
Cre06g2315 229 SFLD Main.3: Omega- and Tau-like 7 221 IPR045073 -
Cre06g2315 229 FunFam Tau class glutathione S-transferase 89 225 - -
Cre06g2315 229 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 8 87 IPR004045 -
Cre06g2315 229 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 9 216 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Cre06g2315 229 CDD GST_C_Tau 93 217 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Cre06g2315 229 Gene3D Glutaredoxin 5 88 - -
Cre06g2315 229 Gene3D - 89 224 - -
Cre06g2315 229 Pfam Glutathione S-transferase, N-terminal domain 19 81 IPR004045 -
Cre06g2315 229 SUPERFAMILY GST C-terminal domain-like 81 217 IPR036282 -
Cre06g2315 229 SFLD Main (cytGST) 7 221 - -
Cre06g2315 229 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 92 215 IPR010987 -
Cre06g2315 229 CDD GST_N_Tau 11 83 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2315 K00799 - - csv:101217418 417.157
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0336 Cre-Chr5:3082789 Cre06g2315 Cre-Chr6:31098298 2.10E-56 dispersed
Cre05g0462 Cre-Chr5:4183722 Cre06g2315 Cre-Chr6:31098298 2.80E-53 dispersed
Cre05g0464 Cre-Chr5:4188674 Cre06g2315 Cre-Chr6:31098298 1.20E-45 dispersed
Cre06g2315 Cre-Chr6:31098298 Cre07g1425 Cre-Chr7:29280418 6.30E-40 dispersed
Cre06g2315 Cre-Chr6:31098298 Cre05g2601 Cre-Chr5:37106836 1.40E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g252 . . . . . . . . . . . Cma11g00299 . . Sed08g0385 . . Bhi02g00117 Tan09g1846 Cmetu02g0734 . Hepe09g0371 . . Cla06g01435 Cam06g1590 Cec06g1650 Cco06g1642 Clacu06g1551 Cmu06g1506 Cre06g2315 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01302 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013759 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 0 1 1 1 1 1 1 1 3 25