Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2337 ATGGCGACGCCGTTGACAGGGCTACAGCACAGGGACGGTGGCGGAGGAGTGGCCTTTTTGGCTAATTCTGTCAATAAAATGGATTCCGCCTCGTCTCCGTCGTCGCCGAAGGATTGTTTGAGGAGCTCCGAGCCACAGTCTCCGATTCTTATTTTCCTTTTCTTTCACAAAGCAATTCGCAATGAGCTTGATACGCTTCACCGGCTGGCCATGGCGTTCGCTACCGGCCAGAGAGCAGATATTCGGCCGCTATTTGAACGATACCATTTTTTGAGATCGATTTACAAACACCACTCCAATGCTGAAGACGAGGTAATTTTTCCTGCCCTTGATATTCGTGTGAAGAATGTGGCACAGACATATTCCCTTGAACACAAGGGCGAAAGTAATTTGTTTGATCATCTTTTTGAGCTTCTTAATTGTAATACACAAAATGATGAAAGCTTCCCAAGGGAGTTAGCTTCCTGCACTGGTGCCCTAAAGACATCTGTGAGCCAGCACATGGCTAAGGAAGAAGAACAGGTATTTCCCTTGCTTATAGAAAAGTTCTCCTTGGAAGAGCAGGCATCTCTCGTTTGGCAGTTCTTGTGCAGTATTCCTGTGTACATGATGGCTCAATTCCTCCCTTGGCTTTCATCATCTGTTTCACCTGATGAATTTCAGGATCTACAGAAATGTTTAATTAACGTAGTCCCTGAGGAAAAGCTTCTTCGGCAGGTCATATTTACTTGGATGGAAGCGAGAAGTAGTGACAATGTATCAACAAGTTGGTGTGGTGATTCTCTAGTTGGATATCATACAGATCCTACTTCTGATACATCAAATCATCAAACCGGAAATGTAAATTGTGCTTGTGAATCAACCAGCCATGGGAAAAGAAAATACTTGGAGTCAAGTTCTGAGATATCGGATTATGTGGCAACTCATCCAATCAATGAAATACTGTTCTGGCATAATGCCATCAAAAGAGAGTTGAATGACATAGCTGAGGAGGCTAGGAAGATACAACTTTCTGGGAACTTTAGTAATCTATCAACTTTTAACGAGAGGTTGCAATTCATTGCTGAAGTTTGCATATTTCATAGTATTGCTGAGGACAAGGTAATCTTTCCTGCAGTAGATGGAGAATTTTCTTTTCTCCAGGAACATGCTGAAGAAGAAAGTCAATTCAATGCGTTTAGGTGCCTGATTGAAAATATTCAAAGTGCAGGGGCTAGTTCTACTTCAAGAGCTGAATTTTACGTGAAGTTGTGTTCTCATGCTGATCAAATAATGGATACCATTAAGAGGCACTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCTAGAAAGCACTTCAGTTTCAAGAGACAACGAGAATTATTGTATCAAAGCTTGTGCATGATGCCTTTGAAATTGATCGAGCGTGTCTTGCCATGGCTAGTAGGATCAGTGAAAGAAGATGAAGCTAGAGATATTCTCAAGAACATTCAATTGGCAGCTCCAGCCAAAGATACTGCTCTGGTGACTCTCTTTTCTGGTTGGGCTTGCAAAGCCCGTAATAATGGTTTGTGCTTGTCTTCGAGAGCAGTTGGCTGTTGTGCAGTTAAAAGGCTTACTGACATTGAAGAAGACATTGTTCAATCATCTTGTTCATGTGCCCCTGCATTGGGTGCAAGGGAAGGTCCAAAATCAGATCCTGAAACTAATGCTAATGCCAAGAGGCCAGCCATACGAAATGTACCGATGCCATGCAGAAGCTGTGATGGCCATATTGCTTCAGAGACTGTTAATATCCAGCAACAATGTTGTGGTGATCAGTCCTGCCATGTTCCAGCTTTAGGAGTAAACATCAAGAATCTGGGGTTAAGTTCTATTTTCACATCCAAGTCTATGCGATCCTTATCTCCCAGCTCTTTTGCACCATCTCTTAATTCCAGCCTTTTTTCATGGGAAACGGATTGTGCCTCTTCTGATGTTGGGTCTGCAGGACGTCCCATTGATACTATTTTTAAATTTCACAAAGCTATACGCAAAGACTTGGAGTATTTAGATGTTGAATCTGGAAAACTTAGTGATTGTGATGGAACTTTTCTCCGGCAATTTATTGGAAGATTTCGTCTTCTATGGGGGTTATATAGAGCTCATAGTAATGCTGAAGATGATATTGTATTTCCTGCTCTGGAATCCAAAGAGACATTGCACAATGTAAGTCACTCGTATACACTGGATCATAAGCAGGAGGAAAAATTATTTGAGGACATTTCATGTGTTCTCTCTGAGATTTCACTCCTCCATGAAAGTTTGCATGAGGTTCCGTTGGATGAGAGTTTTCCCCGAAGTGATGTTGGGGCTGTTAATGTGGTGGGGAAGGATTGTAGCAGAAAGTACAACGAGCTTGCTACAAAGCTTCAAGGAATGTGCAAATCTATAAGAGTTACTCTGGATCAGCATATATTTAGGGAAGAACTTGAACTTTGGCCACTCTTTGGGAAACACTTCTCCGTGGAGGAGCAAGACAAAATAGTTGGACGTATCATTGGAACCACAGGTGCCGAAGTTCTCCAGTCAATGTTGCCATGGGTAACATCAGCACTTACTCAGGACGAACAGAATACTATGATGGATACGTGGAAGCAGGCCACAAAAAACACCATGTTTAATGAATGGCTCAATGAATGTTGGAGAGGGACTGCTTCGTCTACTTTAAATGGTGAAACATCGGAAGCTTGTGTTGCTGAAAAAGATTCTGGGCTCATTGAGAGCTTGGATCAGAATGATCAAATGTTCAAGCCTGGTTGGAAAGATATTTTTCGCATGAACCAAAATGAACTTGAATCAGAAATCAGAAAGGTTTATCAGGACTCGACTCTTGATCCAAGGAGAAAAGCATATCTCGTGCAGAATCTTATGACCAGTCGCTGGATTGCTGCACAGCAGAAATTACCTCAAGCAAATGTAGAAGATAATTCCAATGGTGAAGAGGTAGCAGGGCGAACAGCATCTTTTCGCTGTGCAGAGAAAAATGTGTTTGGGTGTGAACATTACAAAAGAAACTGCAAGCTTCTTGCTGCTTGCTGTGGAAAGTTATTTACCTGTCGATTCTGTCATGACAATGTCAGCGATCACTCAATGGACAGGAAAGCAACATCAGAGATGATGTGCATGAACTGTCTAACAATTCAACCAGTTGGGCCAATATGCACAACACCTTCTTGCAATGGTTTGTCAATGGCGAAATACTATTGCAATATTTGCAAATTTTTTGATGATGAAAGGGCTGTGTATCATTGCCCATTTTGCAACTTATGCCGTGTTGGGAAGGGTCTTGGAATTGATTTTTTCCATTGCATGATTTGCAACTGTTGCCTTGGGATAAAGCTGGAGAGCCATAAGTGCCTGGAGAAAAGTTTAGAAACGAATTGTCCCATCTGTTGTGATTTCTTATTTACATCCAGTGCAACAGTCCGGCCTCTACCCTGTGGTCATTACATGCATTCAGCTTGCTTCCAGGCGTACACTTGCAGCCATTATACCTGTCCTATTTGTAGCAAGTCCTTGGGAGATATGGCGGTTTATTTTGGCATGCTTGACGCCTTGTTGGCTGCTGAGGAGCTGCCGGAAGAGTACAGGGATCGTTGCCAGGACATATTGTGCAATGACTGTGAGAGGAAAGGCACATCGCGGTTCCATTGGCTATATCATAAATGTGGGTTTTGTGGGTCATACAACACTCGGGTAATCAAGAATGATACCGCATCTGCTGATTGCCCTTCTTCCAATCAGGCTCCTCTATTTTCCCAGCTTACCAAGCTCGAATTCAAGCTCATGGCTATGCCGCCTGATAGATCAAACCCACTTCACAACTTCTCTTTGCCGTATCTCAAATGGGGTTCACAGAGATTCCTCAAGTGTATGAAGGTTTCTTCTAACTCCAACCCTTCTACCCTTGATCATCCTTCTATTCAACGCCAATCGAAATCCTATCAATTCCGAGCCAGACCCATCAATTCTAAGCCCACGAACTTCACCAAGCTTTCTTCTCCGATGAACCCGAATCATTCCAAACAGAAACCAACCAACGATCGAAGCAGTTCCATCGAAATTATGCGAGAGAAGATCATGCTTGATATTAGGGAGGAATCGAAGAGACTGAAGTTTTCAATTGCTGATGAAGGGGGTGAGGATGAATCTGCTGCGGCTCGGCCGTGGAATTTAAGGACTCGCAGAGCAGCATGTAAGGCTCCTCAAGACGAGAGGAATCCGGAATTGGGTTCATCTTCAACCAAGGCTGTAATGAAGAAGAAGGAGAAGAATCGGACGGCGTTATTCGTCTCGTTGTCGAAAGAGGAGCTTGAAGAGGATTTTGCGGTGCTGGTTGGTAGGTTACCGAGGAGGCCAAAGAAGAGGCCAAGAGCTGTACAAAGGCAAATGGATGCACTTTTTCCTGGGCTGTTGCTGACTGAAATTACTCTAGATTCATATAAAGTTGATGATGTTCCTGAAGCTTGA 4494 43.08 MATPLTGLQHRDGGGGVAFLANSVNKMDSASSPSSPKDCLRSSEPQSPILIFLFFHKAIRNELDTLHRLAMAFATGQRADIRPLFERYHFLRSIYKHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLNCNTQNDESFPRELASCTGALKTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVYMMAQFLPWLSSSVSPDEFQDLQKCLINVVPEEKLLRQVIFTWMEARSSDNVSTSWCGDSLVGYHTDPTSDTSNHQTGNVNCACESTSHGKRKYLESSSEISDYVATHPINEILFWHNAIKRELNDIAEEARKIQLSGNFSNLSTFNERLQFIAEVCIFHSIAEDKVIFPAVDGEFSFLQEHAEEESQFNAFRCLIENIQSAGASSTSRAEFYVKLCSHADQIMDTIKRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLPWLVGSVKEDEARDILKNIQLAAPAKDTALVTLFSGWACKARNNGLCLSSRAVGCCAVKRLTDIEEDIVQSSCSCAPALGAREGPKSDPETNANAKRPAIRNVPMPCRSCDGHIASETVNIQQQCCGDQSCHVPALGVNIKNLGLSSIFTSKSMRSLSPSSFAPSLNSSLFSWETDCASSDVGSAGRPIDTIFKFHKAIRKDLEYLDVESGKLSDCDGTFLRQFIGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFEDISCVLSEISLLHESLHEVPLDESFPRSDVGAVNVVGKDCSRKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNTMMDTWKQATKNTMFNEWLNECWRGTASSTLNGETSEACVAEKDSGLIESLDQNDQMFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIAAQQKLPQANVEDNSNGEEVAGRTASFRCAEKNVFGCEHYKRNCKLLAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMNCLTIQPVGPICTTPSCNGLSMAKYYCNICKFFDDERAVYHCPFCNLCRVGKGLGIDFFHCMICNCCLGIKLESHKCLEKSLETNCPICCDFLFTSSATVRPLPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRCQDILCNDCERKGTSRFHWLYHKCGFCGSYNTRVIKNDTASADCPSSNQAPLFSQLTKLEFKLMAMPPDRSNPLHNFSLPYLKWGSQRFLKCMKVSSNSNPSTLDHPSIQRQSKSYQFRARPINSKPTNFTKLSSPMNPNHSKQKPTNDRSSSIEIMREKIMLDIREESKRLKFSIADEGGEDESAAARPWNLRTRRAACKAPQDERNPELGSSSTKAVMKKKEKNRTALFVSLSKEELEEDFAVLVGRLPRRPKKRPRAVQRQMDALFPGLLLTEITLDSYKVDDVPEA 1497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31309517 31324934 + CrPI670011_06g023370.1 Cre06g2337 501799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2337 1497 Gene3D - 1207 1250 - -
Cre06g2337 1497 ProSiteProfiles Zinc finger CHY-type profile. 1000 1069 IPR008913 GO:0008270(InterPro)
Cre06g2337 1497 Pfam Protein of unknown function (DUF1639) 1441 1489 IPR012438 -
Cre06g2337 1497 ProSiteProfiles Zinc finger CTCHY-type profile. 1072 1135 IPR017921 -
Cre06g2337 1497 SUPERFAMILY CHY zinc finger-like 1001 1063 IPR037274 GO:0008270(InterPro)
Cre06g2337 1497 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1129 1180 IPR013083 -
Cre06g2337 1497 SMART ring_2 1136 1177 IPR001841 -
Cre06g2337 1497 Pfam CHY zinc finger 1007 1075 IPR008913 GO:0008270(InterPro)
Cre06g2337 1497 SUPERFAMILY RING/U-box 1135 1181 - -
Cre06g2337 1497 CDD Hr-like 51 177 - -
Cre06g2337 1497 CDD RING-H2_Pirh2-like 1135 1178 - -
Cre06g2337 1497 Pfam Hemerythrin HHE cation binding domain 310 443 IPR012312 -
Cre06g2337 1497 Pfam Hemerythrin HHE cation binding domain 52 179 IPR012312 -
Cre06g2337 1497 Pfam Hemerythrin HHE cation binding domain 660 822 IPR012312 -
Cre06g2337 1497 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 695 1242 - -
Cre06g2337 1497 MobiDBLite consensus disorder prediction 1406 1427 - -
Cre06g2337 1497 Pfam Ring finger domain 1135 1177 IPR001841 -
Cre06g2337 1497 ProSiteProfiles Zinc finger RING-type profile. 1136 1178 IPR001841 -
Cre06g2337 1497 CDD Hr-like 313 441 - -
Cre06g2337 1497 MobiDBLite consensus disorder prediction 1329 1358 - -
Cre06g2337 1497 Gene3D nmb1532 protein domain like 46 197 - -
Cre06g2337 1497 Gene3D nmb1532 protein domain like 312 459 - -
Cre06g2337 1497 SUPERFAMILY Zinc hairpin stack 1073 1129 IPR037275 -
Cre06g2337 1497 Gene3D nmb1532 protein domain like 655 887 - -
Cre06g2337 1497 CDD Hr-like 662 822 - -
Cre06g2337 1497 Pfam Zinc-ribbon 1183 1240 IPR039512 -
Cre06g2337 1497 FunFam Zinc finger protein-related isoform 1 1131 1180 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2337 Cre-Chr6:31309517 Cre08g0456 Cre-Chr8:15653874 1.00E-37 dispersed
Cre06g2514 Cre-Chr6:32829790 Cre06g2337 Cre-Chr6:31309517 9.50E-223 transposed
Cre09g2093 Cre-Chr9:39933488 Cre06g2337 Cre-Chr6:31309517 1.20E-14 transposed
Cre05g2433 Cre-Chr5:35758488 Cre06g2337 Cre-Chr6:31309517 1.80E-35 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2337 K16276 - csv:101215023 2429.44