Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre06g2342 | ATGGCTGATCATGATTTCACCTCCTTCCCTCTTGAAGATCCAAATTTAGAGCTCATGGCTTCTCACTTTTCTCCTTCAATTCCCAATTTCACTCACTTTTTACCATTTTCCACTACTACTACCACTACTGATATGTTTTTCCCTTCTCACCAAACCCCACCAAATTTTCCAGAAACTACTAACTTCACTACTTCCCCTGTTTTCCCATCTCACTCTGTTTTGCCACCTGCTCCTTCCTCTGTTTCTACTCATCACTTTCATGATCTCAACAAGAGAAAATCTATGGATGTTTCAGAAAGTACTTCCGGAATTTCAACTCCCCAAGTTTCTGAAACTGGGTTCAAGACTAAATATAGCTCTGGGAAAGGGAAGAGATTGAAAGGTGTTGAGAAAGAAGAGGAGAAATCAACTAGAGAAGTGGTTCATGTTAGAGCTAGAAGAGGCCAAGCCACTGATAGCCACAGCTTGGCTGAAAGGGTGAGAAGAGGAAAAATCAATGAAAGACTAAGATGCTTGAAAGACATTGTCCCAGGTTGCTACAAGACCATGGGTATGGCAGTAATGTTGGATGAGATAATTAATTATGTCCAGTCTCTGCAGAATCAAGTGGAGTTCCTCTCCATGAAACTTGCTGCAGCTAGCTCTTTCTATGACTTTAACTCAGAGGCAGATACCATATCAAAATTACAGAAGGCAAAGGCACATGAAGCAAAAGAATTGGAGAGATTGATGAGAGAAGGATATGGAGGAATAGCTTGCTTCCACTCAAATCTGCCCCTTTGA | 783 | 41.25 | MADHDFTSFPLEDPNLELMASHFSPSIPNFTHFLPFSTTTTTTDMFFPSHQTPPNFPETTNFTTSPVFPSHSVLPPAPSSVSTHHFHDLNKRKSMDVSESTSGISTPQVSETGFKTKYSSGKGKRLKGVEKEEEKSTREVVHVRARRGQATDSHSLAERVRRGKINERLRCLKDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLAAASSFYDFNSEADTISKLQKAKAHEAKELERLMREGYGGIACFHSNLPL | 260 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 31363236 | 31364989 | + | CrPI670011_06g023420.1 | Cre06g2342 | 501804 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre06g2342 | 260 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 93 | 233 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Cre06g2342 | 260 | Gene3D | - | 146 | 217 | IPR036638 | GO:0046983(InterPro) | |
Cre06g2342 | 260 | MobiDBLite | consensus disorder prediction | 93 | 155 | - | - | |
Cre06g2342 | 260 | FunFam | transcription factor BEE 3-like | 146 | 217 | - | - | |
Cre06g2342 | 260 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 147 | 217 | IPR036638 | GO:0046983(InterPro) | |
Cre06g2342 | 260 | MobiDBLite | consensus disorder prediction | 96 | 117 | - | - | |
Cre06g2342 | 260 | Coils | Coil | 226 | 246 | - | - | |
Cre06g2342 | 260 | CDD | bHLH_AtBPE_like | 139 | 224 | - | - | |
Cre06g2342 | 260 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 149 | 199 | IPR011598 | GO:0046983(InterPro) | |
Cre06g2342 | 260 | Pfam | Helix-loop-helix DNA-binding domain | 153 | 200 | IPR011598 | GO:0046983(InterPro) | |
Cre06g2342 | 260 | SMART | finulus | 155 | 205 | IPR011598 | GO:0046983(InterPro) | |
Cre06g2342 | 260 | MobiDBLite | consensus disorder prediction | 123 | 155 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre06g2342 | Cre-Chr6:31363236 | Cre09g1800 | Cre-Chr9:36444904 | 3.70E-28 | dispersed | |
Cre05g1330 | Cre-Chr5:14608794 | Cre06g2342 | Cre-Chr6:31363236 | 1.00E-35 | transposed | |
Cre08g0462 | Cre-Chr8:15932451 | Cre06g2342 | Cre-Chr6:31363236 | 8.60E-39 | transposed | |
Cre01g1447 | Cre-Chr1:27718479 | Cre06g2342 | Cre-Chr6:31363236 | 3.50E-53 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53924 | PF00010 | HLH | 4.30E-05 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre06g2342 | - | - | - | 0.0 |