Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2342 ATGGCTGATCATGATTTCACCTCCTTCCCTCTTGAAGATCCAAATTTAGAGCTCATGGCTTCTCACTTTTCTCCTTCAATTCCCAATTTCACTCACTTTTTACCATTTTCCACTACTACTACCACTACTGATATGTTTTTCCCTTCTCACCAAACCCCACCAAATTTTCCAGAAACTACTAACTTCACTACTTCCCCTGTTTTCCCATCTCACTCTGTTTTGCCACCTGCTCCTTCCTCTGTTTCTACTCATCACTTTCATGATCTCAACAAGAGAAAATCTATGGATGTTTCAGAAAGTACTTCCGGAATTTCAACTCCCCAAGTTTCTGAAACTGGGTTCAAGACTAAATATAGCTCTGGGAAAGGGAAGAGATTGAAAGGTGTTGAGAAAGAAGAGGAGAAATCAACTAGAGAAGTGGTTCATGTTAGAGCTAGAAGAGGCCAAGCCACTGATAGCCACAGCTTGGCTGAAAGGGTGAGAAGAGGAAAAATCAATGAAAGACTAAGATGCTTGAAAGACATTGTCCCAGGTTGCTACAAGACCATGGGTATGGCAGTAATGTTGGATGAGATAATTAATTATGTCCAGTCTCTGCAGAATCAAGTGGAGTTCCTCTCCATGAAACTTGCTGCAGCTAGCTCTTTCTATGACTTTAACTCAGAGGCAGATACCATATCAAAATTACAGAAGGCAAAGGCACATGAAGCAAAAGAATTGGAGAGATTGATGAGAGAAGGATATGGAGGAATAGCTTGCTTCCACTCAAATCTGCCCCTTTGA 783 41.25 MADHDFTSFPLEDPNLELMASHFSPSIPNFTHFLPFSTTTTTTDMFFPSHQTPPNFPETTNFTTSPVFPSHSVLPPAPSSVSTHHFHDLNKRKSMDVSESTSGISTPQVSETGFKTKYSSGKGKRLKGVEKEEEKSTREVVHVRARRGQATDSHSLAERVRRGKINERLRCLKDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLAAASSFYDFNSEADTISKLQKAKAHEAKELERLMREGYGGIACFHSNLPL 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31363236 31364989 + CrPI670011_06g023420.1 Cre06g2342 501804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2342 260 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 93 233 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cre06g2342 260 Gene3D - 146 217 IPR036638 GO:0046983(InterPro)
Cre06g2342 260 MobiDBLite consensus disorder prediction 93 155 - -
Cre06g2342 260 FunFam transcription factor BEE 3-like 146 217 - -
Cre06g2342 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 217 IPR036638 GO:0046983(InterPro)
Cre06g2342 260 MobiDBLite consensus disorder prediction 96 117 - -
Cre06g2342 260 Coils Coil 226 246 - -
Cre06g2342 260 CDD bHLH_AtBPE_like 139 224 - -
Cre06g2342 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 199 IPR011598 GO:0046983(InterPro)
Cre06g2342 260 Pfam Helix-loop-helix DNA-binding domain 153 200 IPR011598 GO:0046983(InterPro)
Cre06g2342 260 SMART finulus 155 205 IPR011598 GO:0046983(InterPro)
Cre06g2342 260 MobiDBLite consensus disorder prediction 123 155 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2342 Cre-Chr6:31363236 Cre09g1800 Cre-Chr9:36444904 3.70E-28 dispersed
Cre05g1330 Cre-Chr5:14608794 Cre06g2342 Cre-Chr6:31363236 1.00E-35 transposed
Cre08g0462 Cre-Chr8:15932451 Cre06g2342 Cre-Chr6:31363236 8.60E-39 transposed
Cre01g1447 Cre-Chr1:27718479 Cre06g2342 Cre-Chr6:31363236 3.50E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53924 PF00010 HLH 4.30E-05 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2342 - - - 0.0