Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2346 ATGAAGCCTTTCGGGTTTAACGTTGAAGAAACTGTAGAGTTTTTGCGCCATGCTGCTCTGGGGAAGCCTTTCCTTCCATATTTGGTTCCTCTGTTTTTTCTTGCTTGGGGTTTCGACAAATGGGTTTTTTCTTTCTCTAATTGGATTCCACTAGCTATTGCCGTCTGGGCGACTTTACAGTATGGGAGTTTTCAACGTCAACTACTAGTAGAGGAGCTAAACAAAAAATGGAGGCAAATTGTATTGGACACCTCGCCCAGTACACCACTGGAGCACTGTGAATGGTTGAATAAGCTGTTGACTGAGATTTGGCCTAACTACATCAACCCAAAACTTTCACTAAAGTTCTCTACTACGGTTGAGAAACGATTAAAACACCGGAGGCCGAAACTTATTGAGAGAATAGAATTATTGGAGTTCTCTCTAGGCTCGTGTCCTCCTGGCTTGGGCCTTCGTGGGACTCAATGGTCAACATCTGGTAATCAGAGAATCATGCGTTTGGGTTTTGATTGGGACACAAATGAAATGAGTATTATGTTGCTTGCCAAGTTGGCAATGCCATTTACTGGAACTGCACGGATTGTTATCAACAGCATTCACATAAAGGGTGATCTTCTCTTGAGGCCAATCTTGGATGGGAGAGCAATTTTGTATTCATTTGTTTGTACTCCAGAAGTGAGAATAGGAGTTGCTTTTGGAAGTGGTGGAAGCCAGTCGTTACCTGCAACAGAGCTGCCAGGCGTTTCTTCTTGGCTGGTTAAACTTCTAACAGACATTATAGTAAGGACAATGGTCGAACCTCGACGCCGCTGTCTCTCATTGCCAGCAGTTGATCTGAGTAAAAAGGCTGTTAGTGGTATAATATATGTGACAGTCATCTCGGCCAGTAAGCTTTCCAGAAACAGTTTGAGAGGAAACTCTTCCAGGAAACCAGCGAGTACCTATATGAATAGTCCACCAGACGAAAACTTAAGTGATAAGGATGATCTGCAGACATTTGTCGAGGTGGAACTTGATGAGCTAAGTAGGAGGACTACTGTAAGATTAGGCTCCAGCCCTGTATGGAATTCAACATTCAATATGATTCTACATGAAGATACAGGAACTCTTCGGTTCAATCTTTATGAGTCTAACCCATGCAATGTGAAGTATGACTATCTAGCCAGTTGTGAAGTAAAGATGAAGTACGCTGCTGATGATTCCACAACATTTTGGGCAATAGGATCTGACTCTGAAGTAATAGCGAAGCACAGTGAGTTTTGTGGAAAAGAGGTTGAAATGGTTGTCCCATTTGAAGGCGTCGACTGTGGGGAGTTAACAGTGAAGCTTATTGTTAAAGAGTGGCAATTCTCTGATGGTTCACATAGCTCGCATAATTTTCATGTTAGACCTCAGCAATCAGTTAATGGATCCTCAAACTTTCCTTCAAGAACTGGAAGGAAGATCGCCATTACCATTGTAGAAGGAAAAGATCTCAGTTTGAAGGATAAAACTGGGAAGTGTGAGTCATATGTAAAATTGGAATATGGGAAGGCTCTCCAGAAAACAAGAACTGCTATTTCTGTTAATCCTAATTGGAATCAGAAGTTTGAGTTTGATGAGATTGGAGGTGGTGAATACCTCAAGATAAAATGCTTTTGTGTAGATATATTCGGTGATGAAAACATCGGTACTGCCCGAGTAAATTTGGAAGGACTTCTTGAAGGAACAGTCAGGGATGTATGGGTCCCTCTCGAAAAAGTAAATTCTGGAGAACTAAGGCTTATGATAGAGGCAGTCAAGGTAGATGACTATGAAGGATCAAGGGGTTCGAACATAGGCTCAAATAATGGTTGGATAGAACTTGTTATCATAGAAGCTAAAGATTTGGTTGCTGCTGATATTGGAGGGACAAGCGACCCTTATGTGAGAGTTCAATATGGCAACTTGAAGAAAAGAACAAAGGTTATGTTCAAAACTTTAAATCCTCATTGGAATCAGACCTTAGAGTTCCCTGATGATGGCAGCCCTTTACTGTTGCATGTGAAAGACCACAATGCTTTACTACCCACATCAAGCATAGGCGACTGTGTTGTCGAGTATCAGAGATTGCCTCCAAACCAAATGGCTGACAAATGGATACCTCTTCAAGGGGTGAAAAGAGGAGAGATCCACATCCAAATCACAAGAAAAGTTCCAGATCTAGAGAAAGAGAAAAGAGTTAGTTTAGATTCAAGACCCACCTCGGATTCCGAATTATCTGTTACCAAGGCATATCAAGTTTCAAGTCAGATGAAGGAAACAATCAGCAAGTTTCACACTTTAATCGAGGAGGCTAATCTCGACGGTCTTTCTGCAACGTTGAGTGAACTAGAAAGCCTGGAGGAACTGCAAGAGGAATATATACTACAGCTTGAAACTGAACAAACGCTTCTTATAAATAAGGTGAAGGAGCTTGGTCAGGAAATTCTTAATTCTCCTGCTTCAATTAATATGGCCTTCGCAACTACCAAACTATCGGAACTTCCATTGAAGAGCTCACTTCCACTCTCCTCCCACTCCCGTACTCTTCTCTCAAACCCCAATTTGTCTTTGCAGATTCTAAACACATTCTCTTCTCTCCGAACCCCCACTGAGCATAGCGGCAAAAGAACTCCTAAAACCTCCCACAATTCTGGACCCCCATCTTCTTCTTCTTCCTCTTGGATCTCCAAATGGCCTCCTGGGAGCTCTCGGTATGATCGTAAAGTTGAGAAGAAGGTGGTCCAACCGACCCGAGATGATCGGACCGATCGAGCGGAGAATCAAACGCAGTACTTCGATAAGGACAAAGGGCAGACTGCAATTGAGCGAATTGTGCTTCGCTTACGGAATTTAGGGATAGGTTCAGATGATGAGGACGAGGATGAGGAGGATAAAGACGATAACGATTTGGATTCTCCGGAGGCAATGCCGGTGACTGGAGAGGAAAGACTTGGGGATTTACTTCAACGTGAATGGATTCGACCGGATGGCGCATTGGATTCGAAAGAGGATGGGGAGGATGAAATGGTTCTACCATGGGAGAGAGAGGAGGAAAGGGCTGAAGAGGAGGAGGGTGGAAGAGGGTTGAAAAGGAGAAAGATGAAGGCTCCGACATTAGCTGAATTGACTATTGAAGATGAGGAGCTGAGGCGATTGAGGAGAATGGGGATGTTTCTTAGAGAGCGGATTAATGTACCGAAAGCTGGGATTACACAGGCAGTGCTAGAGAAGATTCATGGGAAATGGAGGAAGGAGGAATTGGTAAGGCTTAAGTTTCATGAGGAGCTTGCGCACGATATGAAGACAGCACATGAGATTGTAGAGCGACGAACCGGGGGATTGGTTCTATGGAGGTCTGGAAGTGTTATGGTAGTTTACCGCGGTAGTAACTATGAAGGACCTTCTAAAACTAAACCCCTTACAAGGGAGGGGGATGGGGTGTTCATCCCAGATGTTGCTTCTGCTGCCCCTTCGGCAATGAGTGAGAATGTTGCAGCTTCAGCTCCAGAGAAGACCAAGATGCCTATTGGGCCTCCAAAGTCTAATGAGGGCATGTCAGAGGAAGAGGCTGAATACAACCAGTTACTAGATGGTTTAGGTCCTCGTTTTGTTGAATGGTGGGGCACAGGAGTGCTTCCTATTGATGCTGATCAGCTTCCTCCAAGTATTCCCGGTTACAAAACTCCTTTCAGGCTTCTTCCAACTGGAATGCGGTCTCGACTTACCAATGCAGAGATGACTCAGATGAGGAAATTTGCAAAATCCTTACCTTGTCATTTTGCCCTTGGGAGAAACAGGAACCATCAGGGTTTGGCTGTTGCTATACTTAAACTTTGGGAAAAAAGCCTAGTGGTTAAAATTGCTGTTAAAAGAGGTATACAGAATACCAATAATAAACTCATGGCTGAGGAGATAAGGAACTTAACAGGAGGTGTGTTACTATTGAGAAATAAATATTTCATCGTCATATACCGCGGGAAGGATTTTCTCCCACCAAGTGTAGCCGTAGCTTTGGCAGAAAGGCAGGAATTAACAAAACAGATTCAAGATGTGGAAGAGAAAGCTCGAAGTAAAGTGGTTGAGGCAACTTTGTCAAGCATTGATGGACAGGCACCTGCAGGTACCTTGGCTGAATTCTATGAGGCTCAGTCCAGGTGGGGAAGGGAAATAACTGCTGAAGAGCGTGAAAAAATGGTTGAAGAAAGCTCCAGAGCAAAAACTGCAAGACTTGTCAGACGAATTGAACATAAACTAGGTGTTGCCCAAGCGAAGAAACTTAGAGCAGAAAGATTGCTATCTAAAATTGAAGCATCCATGGTTCTTTCTGGCCCTGATGATGACCAGGAAACAATAACAGATGAGGAACGGGTCATGTTTCGGAGAGTTGGGTTACGAATGACAGCATATTTACCTATAGGCATTCGTGGTGTCTTTGATGGTGTTGTGGAAAACATGCATTTACACTGGAAACATAGAGAGCTTGTGAAGTTAATTAGCAAGCAAACAACACTTGCTTTTGTGGAAGAAACTGCAAGACTGTTAGAGTATGAGAGTGGTGGAATACTAGTTTCAATAGATAGAATTCCAAAAGGATATGCCCTTATTTACTATCGAGGAAAGAATTATCGTCGACCCATTGCCTTGAGACCAAGAAACTTACTTACAAAGGCAAAAGCATTAAAGCGTTCAGTTGCCATGCAGCGTCACGAGGCTCTCAGTCAGCATATATCTGAACTCGAGAAAAACATAGAGCAAATGAAGAAAGAAATTGGTGTCACTGAAGATTCAGATGATAATAATAACTGGTCGTCTCAGGATGGACCTGTCTCAGAATCTTTCCAAGACAAGGAAGCATCTTTGTCTGCGTTTTCAGATGGTGACGATGATGAAGATAGCATTGACGAAGACAGTGAGTACGAAGAGGATGAAGATTTTGATTTTTCCGATTCAGAAGGCACCGATGATCTACTGAACTAG 4980 43.17 MKPFGFNVEETVEFLRHAALGKPFLPYLVPLFFLAWGFDKWVFSFSNWIPLAIAVWATLQYGSFQRQLLVEELNKKWRQIVLDTSPSTPLEHCEWLNKLLTEIWPNYINPKLSLKFSTTVEKRLKHRRPKLIERIELLEFSLGSCPPGLGLRGTQWSTSGNQRIMRLGFDWDTNEMSIMLLAKLAMPFTGTARIVINSIHIKGDLLLRPILDGRAILYSFVCTPEVRIGVAFGSGGSQSLPATELPGVSSWLVKLLTDIIVRTMVEPRRRCLSLPAVDLSKKAVSGIIYVTVISASKLSRNSLRGNSSRKPASTYMNSPPDENLSDKDDLQTFVEVELDELSRRTTVRLGSSPVWNSTFNMILHEDTGTLRFNLYESNPCNVKYDYLASCEVKMKYAADDSTTFWAIGSDSEVIAKHSEFCGKEVEMVVPFEGVDCGELTVKLIVKEWQFSDGSHSSHNFHVRPQQSVNGSSNFPSRTGRKIAITIVEGKDLSLKDKTGKCESYVKLEYGKALQKTRTAISVNPNWNQKFEFDEIGGGEYLKIKCFCVDIFGDENIGTARVNLEGLLEGTVRDVWVPLEKVNSGELRLMIEAVKVDDYEGSRGSNIGSNNGWIELVIIEAKDLVAADIGGTSDPYVRVQYGNLKKRTKVMFKTLNPHWNQTLEFPDDGSPLLLHVKDHNALLPTSSIGDCVVEYQRLPPNQMADKWIPLQGVKRGEIHIQITRKVPDLEKEKRVSLDSRPTSDSELSVTKAYQVSSQMKETISKFHTLIEEANLDGLSATLSELESLEELQEEYILQLETEQTLLINKVKELGQEILNSPASINMAFATTKLSELPLKSSLPLSSHSRTLLSNPNLSLQILNTFSSLRTPTEHSGKRTPKTSHNSGPPSSSSSSWISKWPPGSSRYDRKVEKKVVQPTRDDRTDRAENQTQYFDKDKGQTAIERIVLRLRNLGIGSDDEDEDEEDKDDNDLDSPEAMPVTGEERLGDLLQREWIRPDGALDSKEDGEDEMVLPWEREEERAEEEEGGRGLKRRKMKAPTLAELTIEDEELRRLRRMGMFLRERINVPKAGITQAVLEKIHGKWRKEELVRLKFHEELAHDMKTAHEIVERRTGGLVLWRSGSVMVVYRGSNYEGPSKTKPLTREGDGVFIPDVASAAPSAMSENVAASAPEKTKMPIGPPKSNEGMSEEEAEYNQLLDGLGPRFVEWWGTGVLPIDADQLPPSIPGYKTPFRLLPTGMRSRLTNAEMTQMRKFAKSLPCHFALGRNRNHQGLAVAILKLWEKSLVVKIAVKRGIQNTNNKLMAEEIRNLTGGVLLLRNKYFIVIYRGKDFLPPSVAVALAERQELTKQIQDVEEKARSKVVEATLSSIDGQAPAGTLAEFYEAQSRWGREITAEEREKMVEESSRAKTARLVRRIEHKLGVAQAKKLRAERLLSKIEASMVLSGPDDDQETITDEERVMFRRVGLRMTAYLPIGIRGVFDGVVENMHLHWKHRELVKLISKQTTLAFVEETARLLEYESGGILVSIDRIPKGYALIYYRGKNYRRPIALRPRNLLTKAKALKRSVAMQRHEALSQHISELEKNIEQMKKEIGVTEDSDDNNNWSSQDGPVSESFQDKEASLSAFSDGDDDEDSIDEDSEYEEDEDFDFSDSEGTDDLLN 1659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31397524 31410345 + CrPI670011_06g023460.1 Cre06g2346 501808

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2346 1659 SUPERFAMILY YhbY-like 1242 1334 IPR035920 -
Cre06g2346 1659 Pfam CRS1 / YhbY (CRM) domain 1046 1128 IPR001890 GO:0003723(InterPro)
Cre06g2346 1659 Pfam CRS1 / YhbY (CRM) domain 1452 1539 IPR001890 GO:0003723(InterPro)
Cre06g2346 1659 Pfam CRS1 / YhbY (CRM) domain 1242 1326 IPR001890 GO:0003723(InterPro)
Cre06g2346 1659 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 480 593 IPR035892 -
Cre06g2346 1659 Gene3D C2 domain 285 427 IPR035892 -
Cre06g2346 1659 SMART CRS1_YhbY_2 1452 1539 IPR001890 GO:0003723(InterPro)
Cre06g2346 1659 SMART CRS1_YhbY_2 1045 1128 IPR001890 GO:0003723(InterPro)
Cre06g2346 1659 SMART CRS1_YhbY_2 1242 1326 IPR001890 GO:0003723(InterPro)
Cre06g2346 1659 Coils Coil 1335 1362 - -
Cre06g2346 1659 MobiDBLite consensus disorder prediction 867 936 - -
Cre06g2346 1659 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 607 722 IPR035892 -
Cre06g2346 1659 ProSiteProfiles C2 domain profile. 269 406 IPR000008 -
Cre06g2346 1659 MobiDBLite consensus disorder prediction 1592 1659 - -
Cre06g2346 1659 MobiDBLite consensus disorder prediction 880 900 - -
Cre06g2346 1659 Coils Coil 784 804 - -
Cre06g2346 1659 MobiDBLite consensus disorder prediction 1597 1620 - -
Cre06g2346 1659 MobiDBLite consensus disorder prediction 1164 1186 - -
Cre06g2346 1659 SUPERFAMILY YhbY-like 1044 1137 IPR035920 -
Cre06g2346 1659 CDD C2 613 709 - -
Cre06g2346 1659 ProSiteProfiles CRM domain profile. 1240 1337 IPR001890 GO:0003723(InterPro)
Cre06g2346 1659 FunFam CRS2-associated factor 1, chloroplastic 1241 1337 - -
Cre06g2346 1659 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 279 398 IPR035892 -
Cre06g2346 1659 Gene3D - 1043 1140 IPR035920 -
Cre06g2346 1659 Gene3D - 1451 1551 IPR035920 -
Cre06g2346 1659 Gene3D - 1241 1333 IPR035920 -
Cre06g2346 1659 SMART C2_3c 612 706 IPR000008 -
Cre06g2346 1659 SMART C2_3c 481 575 IPR000008 -
Cre06g2346 1659 SMART C2_3c 287 406 IPR000008 -
Cre06g2346 1659 MobiDBLite consensus disorder prediction 302 326 - -
Cre06g2346 1659 MobiDBLite consensus disorder prediction 1625 1659 - -
Cre06g2346 1659 ProSiteProfiles CRM domain profile. 1450 1550 IPR001890 GO:0003723(InterPro)
Cre06g2346 1659 SUPERFAMILY YhbY-like 1451 1549 IPR035920 -
Cre06g2346 1659 Coils Coil 1570 1597 - -
Cre06g2346 1659 MobiDBLite consensus disorder prediction 1015 1035 - -
Cre06g2346 1659 FunFam CRM-domain containing factor CFM3B, chloroplastic 1451 1553 - -
Cre06g2346 1659 CDD C2 484 578 - -
Cre06g2346 1659 MobiDBLite consensus disorder prediction 956 971 - -
Cre06g2346 1659 ProSiteProfiles C2 domain profile. 594 707 IPR000008 -
Cre06g2346 1659 MobiDBLite consensus disorder prediction 904 936 - -
Cre06g2346 1659 MobiDBLite consensus disorder prediction 955 982 - -
Cre06g2346 1659 CDD SMP_SF 112 272 - -
Cre06g2346 1659 ProSiteProfiles C2 domain profile. 463 576 IPR000008 -
Cre06g2346 1659 MobiDBLite consensus disorder prediction 302 321 - -
Cre06g2346 1659 FunFam CRS2-associated factor 1, chloroplastic 1044 1139 - -
Cre06g2346 1659 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 89 275 IPR031468 GO:0008289(InterPro)
Cre06g2346 1659 Pfam C2 domain 481 578 IPR000008 -
Cre06g2346 1659 Pfam C2 domain 288 396 IPR000008 -
Cre06g2346 1659 Pfam C2 domain 613 709 IPR000008 -
Cre06g2346 1659 Gene3D C2 domain 599 724 IPR035892 -
Cre06g2346 1659 Gene3D C2 domain 464 597 IPR035892 -
Cre06g2346 1659 ProSiteProfiles CRM domain profile. 1043 1139 IPR001890 GO:0003723(InterPro)
Cre06g2346 1659 PANTHER OS01G0128800 PROTEIN 6 826 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2346 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2346 Cre-Chr6:31397524 Cre11g0815 Cre-Chr11:5414870 6.60E-14 dispersed
Cre01g0524 Cre-Chr1:4532490 Cre06g2346 Cre-Chr6:31397524 7.90E-21 transposed
Cre03g1820 Cre-Chr3:35050865 Cre06g2346 Cre-Chr6:31397524 1.20E-136 transposed
Cre05g0567 Cre-Chr5:5019794 Cre06g2346 Cre-Chr6:31397524 3.40E-134 transposed
Cre08g1006 Cre-Chr8:23168500 Cre06g2346 Cre-Chr6:31397524 7.70E-19 transposed
Cre09g1541 Cre-Chr9:31178794 Cre06g2346 Cre-Chr6:31397524 8.30E-20 transposed
Cre10g1598 Cre-Chr10:30081377 Cre06g2346 Cre-Chr6:31397524 1.60E-133 transposed
Cre10g1691 Cre-Chr10:31108628 Cre06g2346 Cre-Chr6:31397524 2.00E-23 transposed
Cre11g1225 Cre-Chr11:10412820 Cre06g2346 Cre-Chr6:31397524 3.40E-117 transposed
Cre01g1448 Cre-Chr1:27733699 Cre06g2346 Cre-Chr6:31397524 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g700 . . . . Bpe01g00652 . . . Cmo10g00488 Cmo11g00446 . . . . Sed08g0566 . Cpe18g00578 Bhi02g00857 Tan09g1584 Cmetu02g1690 . Hepe09g0557 . . . . . . . . . . . . . Lsi06g01075 . . Cme02g01040 . Blo14g00604 . . . . . . . . . Cma10g00453 Cma11g00445 . . . . . . . . . . . Cla06g01466 Cam06g1619 Cec06g1682 Cco06g1674 Clacu06g1584 Cmu06g1535 Cre06g2346 . Csa01g01906 Chy02g02141 .
Vvi17g317 . Blo16g00136 . . . Bpe13g00351 . . . . Cma10g00232 Cma11g00271 Car10g00218 Car11g00248 . . Cpe04g01403 . . . . . . . Cla06g01466 Cam06g1619 Cec06g1682 Cco06g1674 Clacu06g1584 Cmu06g1535 Cre06g2346 . . Cone13ag0281 . . . . . . . . . . . . . . Cmo10g00246 Cmo11g00277 . . . . . Cpe18g00760 . . . . . . . . . . . . . . Lsi06g01329 Csa01g00386 Chy02g02360 Cme02g01739
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016343 0 0 0 0 0 1 0 1 0 1 1 0 1 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 8