Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2350 ATGCGTATGAGCTGTAACGGATGCAGAGTTCTTCGCAAAGGCTGCAGTGAGAGCTGCTCCATCAGACCCTGTCTTCAATGGATCAAATCCCCCCAATCCCAAGCCAACGCCACTTTCTTCCTCGCCAAATTCTACGGCCGAGCTGGCCTTGTTAACCTCATCAATGCCGGCCCTGACCATCTCCGCCCAGCTATTTTTAAATCATTGCTTTTCGAGGCGTGTGGCCGGATTGTGAATCCCATTTTTGGGTCCGCTGGATTGTTGTGGTCCGGGAGCTGGCAGCTCTGTCAGGACGCCGTCGAAGCTGTTCTGAAAGGAGCGCCGATTCTGCCGGTTTCTTCCGAGACGGCGGCGTCGCACATGGGTCCACCCTTGAAAGGCTGCGATATCCGCCATGTCTCCAAACAGCAAAGCTCCGCCTCTGGTTCCGCACTTAAGAAGATCAAGACGCGGCGGCGGTTCAAACGCTCTGCGGCGGCGGTCAAGTCGAAGCCGAAGGAGGAGCCGGTGGTGGTGGTGTCGGAGTTAAAATTCGGAGACCCGACCCGGATTGTATCGGAGCCCCGGTGTTTGAAGTTTGAGTTAGATAATTGGGGGGGTCGTGAGTCGCCGGAGAAGGAGTGCGGCAGCGACCACACCGAGTGCTTGTCGGTGGAGACTGTGGAGGCTTCTTCGGTGGGCCAGGGTGGTGACGTGGAGTTGGAACTTACCTTGGGGTTTGGGCAGAGTCGGATGCTGACGTGA 744 57.12 MRMSCNGCRVLRKGCSESCSIRPCLQWIKSPQSQANATFFLAKFYGRAGLVNLINAGPDHLRPAIFKSLLFEACGRIVNPIFGSAGLLWSGSWQLCQDAVEAVLKGAPILPVSSETAASHMGPPLKGCDIRHVSKQQSSASGSALKKIKTRRRFKRSAAAVKSKPKEEPVVVVSELKFGDPTRIVSEPRCLKFELDNWGGRESPEKECGSDHTECLSVETVEASSVGQGGDVELELTLGFGQSRMLT 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31443051 31443894 + CrPI670011_06g023500.1 Cre06g2350 501812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2350 247 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Cre06g2350 247 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 240 - GO:0010468(PANTHER)
Cre06g2350 247 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1366 Cre-Chr4:32499448 Cre06g2350 Cre-Chr6:31443051 3.40E-41 transposed
Cre05g1345 Cre-Chr5:15126862 Cre06g2350 Cre-Chr6:31443051 8.30E-72 transposed
Cre05g2235 Cre-Chr5:33959300 Cre06g2350 Cre-Chr6:31443051 3.40E-37 transposed
Cre05g2445 Cre-Chr5:35851156 Cre06g2350 Cre-Chr6:31443051 7.50E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53926 PF03195 LOB 6.30E-22 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2350 - - - 0.0