Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre06g2378 | ATGCCACGACGCACGACGATCTCTTTCAATGGGCGCAATATATCAAACATTTGGAACAAAACCACAATAACCTCTGATAAAAATGCATATATCAACAATGCCCTTCCTCCACCACACCACCACCTCGATCGCCTCCTTCGATTCCGATCTTCTTCAACCGGTGGGATCGCCGTCGTCATTTTCCGGTTTCGCTTATTCGTTTTTTCCGTTGGCTTCTGGGACACCTCTCGAAGGTTCGATATGGAGCCGATGGACATAGTTGGAAAGTCTAAAGAGGACGCCTCGCTTCCAAAGGCGACTATGACCAAAATTATCAAAGAGATGTTACCCCCTGATGTACGGGTTGCTAGAGATGCCCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTATCATCCGAGTCTAATGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAACACGTGCTCAAGGCTCTTGAGGTGCTTGGTTTTAGTGAATACATTGAGGAAGTTTATGCTGCATATGAACAACACAGGCTCGAAACTATGCAGGACTCATTGAAAGGTGGGAAGTGGAGTAATGGAGCTGAGATGACCGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCTGAGGCACGTGCAAGAATGAATGGCAGTAACACTGCACCGAAGCAACCGGAGCCTGAGCAAAGTTTAGAGAGCTAA | 711 | 45.43 | MPRRTTISFNGRNISNIWNKTTITSDKNAYINNALPPPHHHLDRLLRFRSSSTGGIAVVIFRFRLFVFSVGFWDTSRRFDMEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES | 236 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 31696333 | 31699981 | - | CrPI670011_06g023780.1 | Cre06g2378 | 501840 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre06g2378 | 236 | MobiDBLite | consensus disorder prediction | 220 | 236 | - | - | |
Cre06g2378 | 236 | PANTHER | PROTEIN DR1 HOMOLOG | 81 | 234 | IPR044255 | - | |
Cre06g2378 | 236 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 94 | 159 | IPR003958 | - | |
Cre06g2378 | 236 | FunFam | Negative cofactor 2 beta | 86 | 223 | - | - | |
Cre06g2378 | 236 | Gene3D | Histone, subunit A | 84 | 224 | IPR009072 | GO:0046982(InterPro) | |
Cre06g2378 | 236 | MobiDBLite | consensus disorder prediction | 214 | 236 | - | - | |
Cre06g2378 | 236 | SUPERFAMILY | Histone-fold | 92 | 222 | IPR009072 | GO:0046982(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre06g2378 | Cre-Chr6:31696333 | Cre09g0581 | Cre-Chr9:5471554 | 5.70E-12 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53930 | PF00808 | CBFD_NFYB_HMF | 6.40E-22 | CL0012 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre06g2378 | K21751 | - | csv:101214627 | 303.138 |