Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2378 ATGCCACGACGCACGACGATCTCTTTCAATGGGCGCAATATATCAAACATTTGGAACAAAACCACAATAACCTCTGATAAAAATGCATATATCAACAATGCCCTTCCTCCACCACACCACCACCTCGATCGCCTCCTTCGATTCCGATCTTCTTCAACCGGTGGGATCGCCGTCGTCATTTTCCGGTTTCGCTTATTCGTTTTTTCCGTTGGCTTCTGGGACACCTCTCGAAGGTTCGATATGGAGCCGATGGACATAGTTGGAAAGTCTAAAGAGGACGCCTCGCTTCCAAAGGCGACTATGACCAAAATTATCAAAGAGATGTTACCCCCTGATGTACGGGTTGCTAGAGATGCCCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTATCATCCGAGTCTAATGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAACACGTGCTCAAGGCTCTTGAGGTGCTTGGTTTTAGTGAATACATTGAGGAAGTTTATGCTGCATATGAACAACACAGGCTCGAAACTATGCAGGACTCATTGAAAGGTGGGAAGTGGAGTAATGGAGCTGAGATGACCGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCTGAGGCACGTGCAAGAATGAATGGCAGTAACACTGCACCGAAGCAACCGGAGCCTGAGCAAAGTTTAGAGAGCTAA 711 45.43 MPRRTTISFNGRNISNIWNKTTITSDKNAYINNALPPPHHHLDRLLRFRSSSTGGIAVVIFRFRLFVFSVGFWDTSRRFDMEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31696333 31699981 - CrPI670011_06g023780.1 Cre06g2378 501840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2378 236 MobiDBLite consensus disorder prediction 220 236 - -
Cre06g2378 236 PANTHER PROTEIN DR1 HOMOLOG 81 234 IPR044255 -
Cre06g2378 236 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 94 159 IPR003958 -
Cre06g2378 236 FunFam Negative cofactor 2 beta 86 223 - -
Cre06g2378 236 Gene3D Histone, subunit A 84 224 IPR009072 GO:0046982(InterPro)
Cre06g2378 236 MobiDBLite consensus disorder prediction 214 236 - -
Cre06g2378 236 SUPERFAMILY Histone-fold 92 222 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2378 Cre-Chr6:31696333 Cre09g0581 Cre-Chr9:5471554 5.70E-12 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53930 PF00808 CBFD_NFYB_HMF 6.40E-22 CL0012 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2378 K21751 - csv:101214627 303.138