Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2398 ATGAAAATCCGATCGGTGAAGCTCCGAGAAGCCCACAAAGCCGCCAGCAATGGCAAAGCTTCCTTCTGCTCCGTCCTCTGGGACCAACAAGCCTACCATATTGTCACTGCTTCCTCTTCCGAATCCGCCATATCCATCCACGATTCTCTTCTTCCTTCCACTACTCCGAAAATCATTCATCATCATCGTGAAGGGGTCACCGCGCTGGCTCTTAGCCCTAATTCTACGTGTCTCGCTTCTGGATCCATGGATCGATCCGTCAAGCTCTACAAGTTTCCCGGTGGAGAATTTGAGACCAATATCACAAGATTTACGCTGCCAATACGCATCCTTGGGTTTAATAAATCCGGAAGCCTCTTGGCAGCTGCTGGAGACGATGACGGTATTAAGCTAATTAACACAGTCGATGGTTCAATTGCGAGAGTTTTGAAAGGTCATAAAGGAGCCGTTACTGGGCTGGCGTTTGACCCCAATAGTGAATACTTAGCGTCTGTGGATTCAATTGGAACTGTAATTTTATGGGAACTTCAATCTGGAAGTATAATACACAACCTCAAAGGCATAGCTCCACACACAGGTTCGGACCCTTCCGTTATGAATGTTTTAAGCTGGAGTCCTGACGGAGAGACGTTAGCAGTCCCAGGTTTAAGAAATGATGTTGTGATGTATGATAGAGATACTGCTGAAAAACTGTTTGCATTGAGGGGAGATCACACTCAGCCGATTTGTTTCCTGTCATGGTCACCAAATGGCAAATACATGGCTACTTCTTCCTTGGATAGGCAAATTCTGATATGGGATGTTGATCAGAAGTTGGATATTGATAGACAAAAATTCGATGAAAGAATATGTTGCATGGCTTGGAAGCCAATTGGCAATGCCTTGGCGGTTATTGATGTCATGGGTAAGTATGGGGTATGGGAATCAGTTGTTCCATCTTCTATGAAATCTCCAACTGAAGATATCCCAAAATTGCAATCAAGGAATAGCAATGGCTTGCTCTTGTTTGATGAAGAGGATGAGGAGCCTAGTGCACATGGCAATTCGAGTGACCTTGGAGAAGATAGCCATTACGAATCTGAAATTCCAACTCGAAAAAGGTTGCGTAAACATTCAACAAATGAAGAAATCTTGGATGAGGCCGACAGTGAAGATTTTAGCTTGCTCCTAAAGTTGGACTCCCGTAAAACATCACATCGAGTTAAAAGGGATAAACCAGATAACATTGACGAGGGAGCTATAGGCATTGCAACATATAGTAGATTGAAACAACAAGAGGCATTTCAACCAGGAGCAACTCCTTTGCAGCCAGGAAAGAAACGCTTTCTGTGTTACAATATGCTTGGAAGTATAACAACTTTTGAACATGATGGGTACTCCCACATAGAGATAGATTTTCATGACACTGGAAGTGGCCCACGAGTTCCTTCAATGAATGACCATTTTGGTTTCACGATGGCTGCACTGGATGAGAATGGTAGTGTCTTTGCAAACCCTTGTAAGGGTGAGAAGAATACAAGCACTCTAATGTATCGCCCGTTCGGTAGCTGGGCAAATAACAGCGAGTGGTCTATGAGATTTGATGGAGAAGAAGTTAAGGTTGTCGCAATTGGTAGCAAATGGGTGGCTGCATTTACCAGCCTTAATTATCTTCGCATCTTCACAGATGGCGGTTTACAGAAACATATTCTTTCCCTTGATGGGCCAGTGGTGACCGCATCTGGCTTCAAGGATGAACTTGCATTTGTGACTCATTCTTCAACTTGTCTTCCCTCAAACGACCAGATGCTAGAGTTCCGAATATTAAACATCTCTAATGGAACACAGCTCTTAAGAGGACGTTTGCCATTAACTCCAGGCTCACATCTCACATGGTTTGGATTTAGTGAAGAAGGAAAATTGAGTTCATACGATTCCAAGGGTGTACTCAGAGTGTTTACAAGTCAATATGGTGGCAGTTGGGTACCATTATTCAGTGCCAGTAAAGAGAGAAAGTCGGATGAAAACTATTGGGTGGCTGGGTTGAACGCTAACAAGTTGTTCTGTGTGATATGCAAAAATCCTGACTCATACCCACAGGTGACACCTAAACCTGTTCTTACTCTGCTAAACCTTTCGTTTCCTCTTGCTCTCTCTGACCTGGGCGCAGAAGCACTTGAGAATGAGTTTATGATGAATGATATGCATCTCAAACAGATCCATGGCAGAATGGAGGAAATGGCATTACTTGGATTGTACGACACTGAACTGGATGATGAGGCATTCAGTATTGAAGCTGCTCAAGACAGATGCATCTTAAGGCTCATTGCTTCCTGCTGCAACGGTGATAAGCTTGTCAGGGCTACCGAACTTGTAAAACTTCTGTCGCTGGAGAAATCAGTCAAGGGTGCAATTAAGCTAGTTACTGCTTTGAAACTTCCTAACTTGGCCGAACGTTTCAATGCTATACTAGAGGAAAGGATGCTTAGTGAAACCAAAGGGACTCTAGAAACCACCCTTTCAAGACCTAACTGCAATGGATCTGTCTTACCTAATGCTCCAACCAGCAATACACTAAATTCTGCAGTAAAAGCCAAAACTTCAGAAGTTACTTTCCCATCCTCACCTAAAGGCCCAATACTCTCTGCGCCTTTGTTTACAAAGAAACTCAAGTCTGAAGGAGCAAAGTTCAATTCTGAAAAAACAGAAGATAAGCAAACTTCAGGGGTAAATGAGACATCAAAAATGCACAACACAAATGTAGCAGATGCAAAGAAAGCAGTGTCATTGAGTAAGGTAGAGTCCAACATTGAAACCAACCAACATTTCAAGTCCTCTAATAATCAGAAGGTGAAGCCAGGAGCTGTAAATCAAGTTCCATGTAATCGCCCCTCAAATCCGTTCTTGAAGTCATCAATCAAGTAA 2904 43.15 MKIRSVKLREAHKAASNGKASFCSVLWDQQAYHIVTASSSESAISIHDSLLPSTTPKIIHHHREGVTALALSPNSTCLASGSMDRSVKLYKFPGGEFETNITRFTLPIRILGFNKSGSLLAAAGDDDGIKLINTVDGSIARVLKGHKGAVTGLAFDPNSEYLASVDSIGTVILWELQSGSIIHNLKGIAPHTGSDPSVMNVLSWSPDGETLAVPGLRNDVVMYDRDTAEKLFALRGDHTQPICFLSWSPNGKYMATSSLDRQILIWDVDQKLDIDRQKFDERICCMAWKPIGNALAVIDVMGKYGVWESVVPSSMKSPTEDIPKLQSRNSNGLLLFDEEDEEPSAHGNSSDLGEDSHYESEIPTRKRLRKHSTNEEILDEADSEDFSLLLKLDSRKTSHRVKRDKPDNIDEGAIGIATYSRLKQQEAFQPGATPLQPGKKRFLCYNMLGSITTFEHDGYSHIEIDFHDTGSGPRVPSMNDHFGFTMAALDENGSVFANPCKGEKNTSTLMYRPFGSWANNSEWSMRFDGEEVKVVAIGSKWVAAFTSLNYLRIFTDGGLQKHILSLDGPVVTASGFKDELAFVTHSSTCLPSNDQMLEFRILNISNGTQLLRGRLPLTPGSHLTWFGFSEEGKLSSYDSKGVLRVFTSQYGGSWVPLFSASKERKSDENYWVAGLNANKLFCVICKNPDSYPQVTPKPVLTLLNLSFPLALSDLGAEALENEFMMNDMHLKQIHGRMEEMALLGLYDTELDDEAFSIEAAQDRCILRLIASCCNGDKLVRATELVKLLSLEKSVKGAIKLVTALKLPNLAERFNAILEERMLSETKGTLETTLSRPNCNGSVLPNAPTSNTLNSAVKAKTSEVTFPSSPKGPILSAPLFTKKLKSEGAKFNSEKTEDKQTSGVNETSKMHNTNVADAKKAVSLSKVESNIETNQHFKSSNNQKVKPGAVNQVPCNRPSNPFLKSSIK 967
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31857409 31862276 - CrPI670011_06g023980.1 Cre06g2398 501860

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2398 967 Gene3D - 52 308 IPR015943 GO:0005515(InterPro)
Cre06g2398 967 MobiDBLite consensus disorder prediction 340 373 - -
Cre06g2398 967 SMART WD40_4 94 133 IPR001680 GO:0005515(InterPro)
Cre06g2398 967 SMART WD40_4 52 91 IPR001680 GO:0005515(InterPro)
Cre06g2398 967 SMART WD40_4 136 175 IPR001680 GO:0005515(InterPro)
Cre06g2398 967 SMART WD40_4 2 48 IPR001680 GO:0005515(InterPro)
Cre06g2398 967 SMART WD40_4 227 267 IPR001680 GO:0005515(InterPro)
Cre06g2398 967 SMART WD40_4 178 224 IPR001680 GO:0005515(InterPro)
Cre06g2398 967 SUPERFAMILY WD40 repeat-like 24 307 IPR036322 GO:0005515(InterPro)
Cre06g2398 967 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 184 IPR001680 GO:0005515(InterPro)
Cre06g2398 967 ProSiteProfiles Trp-Asp (WD) repeats profile. 235 276 IPR001680 GO:0005515(InterPro)
Cre06g2398 967 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515(InterPro)
Cre06g2398 967 Pfam WD domain, G-beta repeat 58 90 IPR001680 GO:0005515(InterPro)
Cre06g2398 967 Pfam WD domain, G-beta repeat 237 267 IPR001680 GO:0005515(InterPro)
Cre06g2398 967 Pfam WD domain, G-beta repeat 140 174 IPR001680 GO:0005515(InterPro)
Cre06g2398 967 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 143 180 - -
Cre06g2398 967 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 945 - GO:0000278(PANTHER)|GO:0003682(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)|GO:0043596(PANTHER)
Cre06g2398 967 FunFam Transducin family protein / WD-40 repeat family protein 196 323 - -
Cre06g2398 967 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 235 269 - -
Cre06g2398 967 CDD WD40 62 297 - -
Cre06g2398 967 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 91 - -
Cre06g2398 967 ProSitePatterns Trp-Asp (WD) repeats signature. 254 268 IPR019775 -
Cre06g2398 967 MobiDBLite consensus disorder prediction 887 903 - -
Cre06g2398 967 MobiDBLite consensus disorder prediction 887 967 - -
Cre06g2398 967 MobiDBLite consensus disorder prediction 925 967 - -
Cre06g2398 967 Pfam Minichromosome loss protein, Mcl1, middle region 426 709 IPR022100 -
Cre06g2398 967 Pfam DNA polymerase alpha-binding protein Ctf4, C-terminal domain 719 821 IPR048591 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2398 K11274 - - csv:101211738 1800.02
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g412 . . Bda06g00505 . . . . Bma12g00953 . . . Cma11g00234 . Car11g00211 Sed08g0309 . Cpe04g01438 Bhi02g00049 Tan09g1996 Cmetu02g0986 . Hepe09g0298 . . Cla06g01517 Cam06g1673 Cec06g1734 Cco06g1730 Clacu06g1639 Cmu06g1587 Cre06g2398 Cone11ag0342 . . . . . . . . Blo15g00350 . . Bpe07g00744 . . . . . Cmo11g00237 . . . . . . . . . . . . . . . . . . . . Lsi06g01383 Csa01g00325 Chy02g02416 Cme02g01799
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010498 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31