Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2403 ATGCAAGACATACACTCGATCGCCGGAGGAAGTCGCTTGTTCGGCGGCGGTGGCGGCGGAGACCGTCGTCTACGGCCACACCTCCACCACCATCAAAACCACCAAGCCTTGAAGTGTCCGAGGTGTGATTCTCTCAATACGAAGTTTTGTTATTATAATAATTATAATCTCTCTCAGCCACGTCACTTCTGCAAGAGCTGCCGTCGTTACTGGACGAAAGGCGGTGTTCTCCGTAACGTCCCCGTCGGCGGTGGCTGCCGGAAAACCAAGCGCTCTTCCTCCTCTAAGTCTAAGGTCAACTCAGACGCAGCGGCGACTCCTCCTCCACCTCCTTCCCTCCGTGAACGCAAATCCACTTCTCATTCCAGTAGCGAGAGTTCCAGTTTAACCGCCACAACTACTACCGCTGCTGCCGCAGCGGCGGCGGCAGCGACTGAGGCCGTGTCGGCTCCGTCGTCTAATTCGGCCTCGACTTTATTGAACGTACAGGATACGAAATTGTTCCCTGGTTCGACTACAAATACAAACCCTAATTTCGAAGGTACGGCGGCGGCGGCGATTTCGGACTGCGGAATTTTCTCGGAAATTGGTAGCTTCACGAGCTTGATCACATCGTCTAACGAGACATTGGCGTTTGGATTCGGTAACATGACGGACGTGACGGCGTTTACGATGAATAATCATCAGGCGTTGGCGAATCAATGGCCGCCGCCGCAGAGAATGATGAACGTTAACGATGAACTGAAGATGCAGGAGATCACAGACGGCGGAGGAGGAGGGTACATGGATCAGACGGCTCAGGTGTATCCAGCAGGGCTTCAGAATAACAGATCAAACAACATTGGATTTGGTCCGTTGGATTGGCAATCAAACGGAGATCATCAAGTTCTGTTTGATCTCCCCAACGCCGTAGATCAAGCATACTGGAGTCAAAATCAATGGAGCGATCAAGACCAGCCTAATCTGTACCTTCCGTAA 978 52.15 MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKVNSDAAATPPPPPSLRERKSTSHSSSESSSLTATTTTAAAAAAAAATEAVSAPSSNSASTLLNVQDTKLFPGSTTNTNPNFEGTAAAAISDCGIFSEIGSFTSLITSSNETLAFGFGNMTDVTAFTMNNHQALANQWPPPQRMMNVNDELKMQEITDGGGGGYMDQTAQVYPAGLQNNRSNNIGFGPLDWQSNGDHQVLFDLPNAVDQAYWSQNQWSDQDQPNLYLP 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31939851 31940828 + CrPI670011_06g024030.1 Cre06g2403 501865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2403 325 MobiDBLite consensus disorder prediction 1 26 - -
Cre06g2403 325 MobiDBLite consensus disorder prediction 81 131 - -
Cre06g2403 325 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 29 202 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2403 325 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre06g2403 325 Pfam Dof domain, zinc finger 35 91 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre06g2403 325 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2403 Cre-Chr6:31939851 Cre10g0921 Cre-Chr10:11163289 1.00E-27 dispersed
Cre01g1492 Cre-Chr1:28170307 Cre06g2403 Cre-Chr6:31939851 6.50E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53933 PF02701 zf-Dof 4.40E-33 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2403 - - - 0.0