Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2410 ATGGAGTCTTGGAGTTATGTTTCTGAAGGAAAGGGATGTATGTCTGATGAAATGAATTCACCTACTAGTTCACTTGCAAGGAACAAAGATTCTTTGTTGGGCTGGGAATTCAAAAACCCTTGCAGCTTTGGTAGCACTATGTTACCAACAAGTCAACAGGTTGACAATCAAGGTTTTGGGGAACTTGTTTTCCCTGAAATGATTGGGAAACAATTACCTGACAATTCAGTTTGTGATATTTTGAGTAGTAAGGTTGTTGGTGGAAGATTTCTGAATCCAGCTATGAATTCCTCCAATGCATTTCTGGGGGAGGATGAATCCACTTCAAAGCTCTCTGGCTCTATTGTCGATTCTAGCAGCCGAGATTCATCGTTTATTGATTTAAAGCTGGGGAGATTTGCTGACCAAAGAGATGCTCATGGTTACAAATTTTTTAAGGGAGGCCCCATTTTATCATCATCTGAGTCGTCGATGCCTTCAAAGCGGGTACGAGCTTCCGGGTTGAATTCCCAAACTTATTATTGCCAAGTTTATGGCTGTAATAAGGATCTCAGCTCCTCTAAAGATTACCACAAGAGGCATAAAGTTTGTGAAGTTCACTCAAAGACTGCAAAAGTTATTGTGAATGGCATAGAACAAAGGTTTTGTCAGCAATGTAGCAGGTTTCATTTGCTAGCTGAGTTTGATGATGGTAAGCGCAGCTGTCGTAAACGTCTTGCAGGTCATAATGAACGTCGGAGAAAGCCTCAGGTGGCTATAAATTCTGGCAGGGCCGGAAGGTTTCTTCAGTCATATAATGGTAGCAGGCTTCAAGGAACAGCATTGACAGCAACGTCCTTTATCTGCCAAGAGTTATTACCAAATGGTCTTTTGCATCCAGAGAAATATGGAACAAGTGACTGGTGTAGGACTGTGAAAATTGAAGACAAGAATGAGTATATGCCTTTGTCTGCTGTTCATGTTCCTAGTGGCCACTTGCATTCAAAATCACTCTTCTCTCCTTACGATATTGAAACCCAAGTTCCCACTTTCCATGACAATGGACCAAATGCATCTGCCACAAATATGTTCAAGGAGAACAGTAATCAATATCCTCTTAGTGTAGGAGCATCAACCGACCGACTATCAGGATTATCAGACTCCGGTTGTGCTCTCTCTCTTCTGTCATCTCAAACACAAAACTCCTCAACTCATTCATCAGGGATTCCGATTGGTCGTCCTTTGGTCTTGCTTGATGGCCAAAATCATTACAGCATGAGTCAACTTTCTGAAAAGCTCATGGGAGTAAGCTCCCAGGTTTCTGTGAGTGGTGTGTCCAATAAATTCGAGTCATCAGGGTTGAATGCTTCAGAAGATCCTGGTGAAGTAATGCTTTCTGCTGCCTCCGGATCACTTAAATTTTATGGAAAACAGATCCTTAGCAGCACTGACTCGGATGGTTTTGACAACTGA 1452 42.08 MESWSYVSEGKGCMSDEMNSPTSSLARNKDSLLGWEFKNPCSFGSTMLPTSQQVDNQGFGELVFPEMIGKQLPDNSVCDILSSKVVGGRFLNPAMNSSNAFLGEDESTSKLSGSIVDSSSRDSSFIDLKLGRFADQRDAHGYKFFKGGPILSSSESSMPSKRVRASGLNSQTYYCQVYGCNKDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVAINSGRAGRFLQSYNGSRLQGTALTATSFICQELLPNGLLHPEKYGTSDWCRTVKIEDKNEYMPLSAVHVPSGHLHSKSLFSPYDIETQVPTFHDNGPNASATNMFKENSNQYPLSVGASTDRLSGLSDSGCALSLLSSQTQNSSTHSSGIPIGRPLVLLDGQNHYSMSQLSEKLMGVSSQVSVSGVSNKFESSGLNASEDPGEVMLSAASGSLKFYGKQILSSTDSDGFDN 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32001575 32008809 + CrPI670011_06g024100.1 Cre06g2410 501872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2410 483 ProSiteProfiles Zinc finger SBP-type profile. 172 249 IPR004333 GO:0003677(InterPro)
Cre06g2410 483 SUPERFAMILY SBT domain 173 252 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre06g2410 483 FunFam Squamosa promoter-binding-like protein 14 166 236 - -
Cre06g2410 483 Pfam SBP domain 175 248 IPR004333 GO:0003677(InterPro)
Cre06g2410 483 Gene3D - 166 236 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre06g2410 483 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 109 429 IPR044817 GO:0003677(InterPro)
Cre06g2410 483 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2410 Cre-Chr6:32001575 Cre06g2654 Cre-Chr6:34129125 1.20E-35 dispersed
Cre01g1498 Cre-Chr1:28217262 Cre06g2410 Cre-Chr6:32001575 3.60E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53934 PF03110 SBP 9.10E-32 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2410 - - - 0.0