Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2410 ATGGAGTCTTGGAGTTATGTTTCTGAAGGAAAGGGATGTATGTCTGATGAAATGAATTCACCTACTAGTTCACTTGCAAGGAACAAAGATTCTTTGTTGGGCTGGGAATTCAAAAACCCTTGCAGCTTTGGTAGCACTATGTTACCAACAAGTCAACAGGTTGACAATCAAGGTTTTGGGGAACTTGTTTTCCCTGAAATGATTGGGAAACAATTACCTGACAATTCAGTTTGTGATATTTTGAGTAGTAAGGTTGTTGGTGGAAGATTTCTGAATCCAGCTATGAATTCCTCCAATGCATTTCTGGGGGAGGATGAATCCACTTCAAAGCTCTCTGGCTCTATTGTCGATTCTAGCAGCCGAGATTCATCGTTTATTGATTTAAAGCTGGGGAGATTTGCTGACCAAAGAGATGCTCATGGTTACAAATTTTTTAAGGGAGGCCCCATTTTATCATCATCTGAGTCGTCGATGCCTTCAAAGCGGGTACGAGCTTCCGGGTTGAATTCCCAAACTTATTATTGCCAAGTTTATGGCTGTAATAAGGATCTCAGCTCCTCTAAAGATTACCACAAGAGGCATAAAGTTTGTGAAGTTCACTCAAAGACTGCAAAAGTTATTGTGAATGGCATAGAACAAAGGTTTTGTCAGCAATGTAGCAGGTTTCATTTGCTAGCTGAGTTTGATGATGGTAAGCGCAGCTGTCGTAAACGTCTTGCAGGTCATAATGAACGTCGGAGAAAGCCTCAGGTGGCTATAAATTCTGGCAGGGCCGGAAGGTTTCTTCAGTCATATAATGGTAGCAGGCTTCAAGGAACAGCATTGACAGCAACGTCCTTTATCTGCCAAGAGTTATTACCAAATGGTCTTTTGCATCCAGAGAAATATGGAACAAGTGACTGGTGTAGGACTGTGAAAATTGAAGACAAGAATGAGTATATGCCTTTGTCTGCTGTTCATGTTCCTAGTGGCCACTTGCATTCAAAATCACTCTTCTCTCCTTACGATATTGAAACCCAAGTTCCCACTTTCCATGACAATGGACCAAATGCATCTGCCACAAATATGTTCAAGGAGAACAGTAATCAATATCCTCTTAGTGTAGGAGCATCAACCGACCGACTATCAGGATTATCAGACTCCGGTTGTGCTCTCTCTCTTCTGTCATCTCAAACACAAAACTCCTCAACTCATTCATCAGGGATTCCGATTGGTCGTCCTTTGGTCTTGCTTGATGGCCAAAATCATTACAGCATGAGTCAACTTTCTGAAAAGCTCATGGGAGTAAGCTCCCAGGTTTCTGTGAGTGGTGTGTCCAATAAATTCGAGTCATCAGGGTTGAATGCTTCAGAAGATCCTGGTGAAGTAATGCTTTCTGCTGCCTCCGGATCACTTAAATTTTATGGAAAACAGATCCTTAGCAGCACTGACTCGGATGGTTTTGACAACTGA 1452 42.08 MESWSYVSEGKGCMSDEMNSPTSSLARNKDSLLGWEFKNPCSFGSTMLPTSQQVDNQGFGELVFPEMIGKQLPDNSVCDILSSKVVGGRFLNPAMNSSNAFLGEDESTSKLSGSIVDSSSRDSSFIDLKLGRFADQRDAHGYKFFKGGPILSSSESSMPSKRVRASGLNSQTYYCQVYGCNKDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVAINSGRAGRFLQSYNGSRLQGTALTATSFICQELLPNGLLHPEKYGTSDWCRTVKIEDKNEYMPLSAVHVPSGHLHSKSLFSPYDIETQVPTFHDNGPNASATNMFKENSNQYPLSVGASTDRLSGLSDSGCALSLLSSQTQNSSTHSSGIPIGRPLVLLDGQNHYSMSQLSEKLMGVSSQVSVSGVSNKFESSGLNASEDPGEVMLSAASGSLKFYGKQILSSTDSDGFDN 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32001575 32008809 + CrPI670011_06g024100.1 Cre06g2410 501872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2410 483 ProSiteProfiles Zinc finger SBP-type profile. 172 249 IPR004333 GO:0003677(InterPro)
Cre06g2410 483 SUPERFAMILY SBT domain 173 252 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre06g2410 483 FunFam Squamosa promoter-binding-like protein 14 166 236 - -
Cre06g2410 483 Pfam SBP domain 175 248 IPR004333 GO:0003677(InterPro)
Cre06g2410 483 Gene3D - 166 236 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre06g2410 483 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 109 429 IPR044817 GO:0003677(InterPro)
Cre06g2410 483 MobiDBLite consensus disorder prediction 1 24 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2410 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2410 Cre-Chr6:32001575 Cre06g2654 Cre-Chr6:34129125 1.20E-35 dispersed
Cre01g1498 Cre-Chr1:28217262 Cre06g2410 Cre-Chr6:32001575 3.60E-150 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g1335 . 181 1009 SBP-box Gene Family AT2G47070 55.2 1.5e-239 826.2
Cre10g1335 . 25 1009 SBP-box Gene Family AT3G60030 54.1 6.7e-274 940.6
Cre06g0977 . 73 216 SBP-box Gene Family AT5G50570 55.8 1.1e-38 157.9
Cre01g1498 . 118 276 SBP-box Gene Family AT1G69170 54.7 1.2e-41 167.9
Cre06g2410 . 152 292 SBP-box Gene Family AT1G69170 60.3 1.5e-41 167.5
Cre10g1335 . 181 1009 SBP-box Gene Family AT2G47070 55.2 1.5e-239 826.2
Cre01g1498 . 118 276 SBP-box Gene Family AT1G69170 54.7 1.2e-41 167.9
Cre06g2410 . 152 292 SBP-box Gene Family AT1G69170 60.3 1.5e-41 167.5
Cre10g1335 . 25 1009 SBP-box Gene Family AT3G60030 54.1 6.7e-274 940.6
Cre06g0977 . 73 216 SBP-box Gene Family AT5G50570 55.8 1.1e-38 157.9
Cre06g0977 . 73 216 SBP-box Gene Family AT5G50670 55.8 1.1e-38 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001097 2 4 1 1 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 5 12 1 80
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53934 PF03110 SBP 9.10E-32 No_clan Cre TF