Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2414 ATGAGGTCTCGGCGTTTCGCTTCCACCGGATCGGTCGCCGACCTTACCGGCTTAGCCGTCTTGCTCATCTTTCTACTTTCCAGCTTCAGTTTCACTTCAACAGAAGCCTATGATGCACTTGATCCCAACGGGAACATCACAATCAAGTGGGATGTAATGAGCTGGACTCCAGATGGCTATGTTGCTGTTGTTACAATGTACAACTTCCAGCAATACCGCCATATTCAAGCTCCAGGTTGGACATTAGGGTGGACATGGGCAAAGAAAGAAGTCATTTGGAGCATGATGGGAGGCCAAACAACCGAACAGGGCGACTGTTCAAGATTCAAAGGAAATACTCCTCATTGCTGCAAGAAAGATCCAACCGTTGTGGATTTATTGCCAGGAACACCTTACAATCAGCAGATTGCAAATTGTTGCAAAGGTGGAGTGATAAACTCATGGGCCCAAGACCCCGGCAATGCAGCAAGTTCATTTCAAGTCAGTGTTGGTGCTGCAGGAACAAGTAACAAAACTGTTAGACTTCCTAAAAACTTCACGCTTAAAGCGCCAGGACCTGGATACACTTGTGGGCCAGCAAAGATTGTGAAGCCAACCAAATTTGTATCTGGAGATAAAAGAAGAGTAACTCAAGCTTTGATGACTTGGAATGTTACATGCACCTATTCTCAATTCCTTGCTCAGAAGACACCCACTTGTTGTGTTTCCCTCTCTTCCTTCTACAATGATACTATAGTCAACTGCCCAACCTGCACTTGCGGATGTCAAAACAACACGGCGGGTTCTGGGAGCTGTGTGGATCCAGATTCTCCATATTTGGCTTCAGTAGTATCAGCTCCTGATAAATCAGGCAACAATGCACCCTTGGTTCAGTGTACCAGCCACATGTGCCCCATTCGAGTCCATTGGCATGTGAAGCTGAATTACAAGGATTACTGGAGGGTGAAGATCACAATCACCAATTTCAATTACCGAATGAACTACACACTCTGGAATCTTGTGGTGCAGCACCCCAATTTTGATAATATTACTAAATTATTCAGCTTTAACTACAAGTCGTTGAGCCCATATGGTGACCTAAATGATACTGCGATGTTATGGGGAGTTAAGTTCTACAATGATCTGCTCAATCAAGCTGGTCCTCTTGGTAATGTGCAGTCTGAGCTCCTATTCCAAAAAGACCAGAACACTTTCACTTTTGACAAAGGTTGGGCTTTTCCAAGAAGAGTTTATTTCAATGGTGATAACTGTGTGATGCCACCTCCAGATGCCTATCCTTATTTGCCAAATGCCAGTTCCAGACCAGCTACATCTCTACTCATGACCATCTTAATATCTTTGGCATTACTGTTGAATTTTGCACAATAA 1368 44.15 MRSRRFASTGSVADLTGLAVLLIFLLSSFSFTSTEAYDALDPNGNITIKWDVMSWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGGQTTEQGDCSRFKGNTPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVINSWAQDPGNAASSFQVSVGAAGTSNKTVRLPKNFTLKAPGPGYTCGPAKIVKPTKFVSGDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVNCPTCTCGCQNNTAGSGSCVDPDSPYLASVVSAPDKSGNNAPLVQCTSHMCPIRVHWHVKLNYKDYWRVKITITNFNYRMNYTLWNLVVQHPNFDNITKLFSFNYKSLSPYGDLNDTAMLWGVKFYNDLLNQAGPLGNVQSELLFQKDQNTFTFDKGWAFPRRVYFNGDNCVMPPPDAYPYLPNASSRPATSLLMTILISLALLLNFAQ 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32022807 32025552 - CrPI670011_06g024140.1 Cre06g2414 501876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2414 455 PIRSF COBRA 9 455 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Cre06g2414 455 PANTHER PROTEIN COBRA 25 446 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Cre06g2414 455 Pfam COBRA-like protein 60 223 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1127 Cre-Chr5:10711693 Cre06g2414 Cre-Chr6:32022807 9.40E-138 dispersed
Cre06g2414 Cre-Chr6:32022807 Cre07g1947 Cre-Chr7:34884676 5.10E-219 dispersed
Cre06g2413 Cre-Chr6:32019750 Cre06g2414 Cre-Chr6:32022807 1.20E-188 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2414 - - - 0.0