Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2417 ATGGAAATGGCTGTTTGCAATGCAAAAGTTGGTTTGGAAAAGAAAAGGAAAAGAAAGCAGAGAAGGAGGGGTAACACCACTAGTGGCGATAACAGAGGTTGCAATCTTGGTGAAGATAATGCTCCAACAGAAAATAATGCTTCTCAAGAATCTCCAAACGAAATGTGCTTGAACATGGACTCAGAAATGGGGCAATCTCATTTAGAAGTAAATCTGCTAGGAGAAAAGAATGAGGAGAAGCACGATGATTTACAGTATGGAGAAGCTACTGGAATATCTGACTTGACCTTCTTGAACGTTAAAGTTCTTAAAGAAGATGATGAGACATCTACTTCCCCAAATGTAGACTTTTGTTCGGCAAATGGAAAGGAAAATTCTTCAGTTCCCAAGGATCCAGATGGGAAAGCTACTGATATGGTTAAAAGAGATGATGAACATACAGAAACCATAGATCATTCAACTCCTTCAAGCCATGTTGAACCCCAAAGGATAAGGAAAAAAAGGCGGCGGCGTAGAAAGGGAAGGTCGTTAGAACCCCCTAAAGAAAGTTTGGAAACCAATATAGGGGACAAAAGGAAAGTTTCTCTATCGAACCATCCTCATGAAGTGGAGACAAATAGCCACCTTAAAAATTTTGTAATAGAAGAGGTTATGAATGGTGTTCAGTTGGAAGAATCAGTTGACTGCCCAATTAGTGAAAAAACAGAGTTGTTGTCTGCAAAGACAAAGGAAAGCTCTATGGTTATTACAGATCCTCAGAAATCCAAGGATTTTGAAAATGCTACCATGGTTAAAAAAGATGATGACTGTTCAGAGACTAAGTATTGCTTGGCTCAATCAAACAGTTATGATACCCATGACAAAACAAAAAAAGAGAGGAAAAAAGGTGGAAGAAGGAGAAAGTTTGCAGATACCTTTGAAGAAAGTTTGAATTCTGATGTGGAAGACATTAAGAAAGATGCTGCATTCAACCGTTTAAATGAAGAGGGTGCAATTAGTTTGCATGAACATTCTACCACCACCAAGATAGTAAAAGATGTTTTGGTGGAAGAAGTGTCAGCCAACTGCTCTGTGGGTGTACGTACATCAGATGTCAAGGAGAGAGCGGAAACCATAAAGAAAAATGTTCCTCATTCGTTGGCTTGTGATGCGGCAAATGATAACATCAGTGCAACTGGTTTGTCAAAGAAAAAGCTTCTCATACTTGATGTAAATGGACTGCTCGTTGATTTTGTTCCATATTTTCCAGATGGATACACTCCAGATTTTGTGATATCACGTAAAGCAGTGTTTAAGAGGCCTTTCTGTGACGACTTTCTACAGTTTTGTTTTGAGAGATTTGAAGTGGGGATATGGTCATCAAGAACCTGGAAGAACCTGAACATGTTAGTTAAGCTTCTTATGGGAGATTCCAGACACAAGCTACTTTTTTGCTGGGATCAATCGCATTGTACAACTACAAGGTTCACCACTATTGAGAACGATAGGAAGCCCCTTGTTTTGAAGGAATTGAAAAAAATATGGGAAAATTTGGAACCGAATCTTCCATGGAAAAAGGGGCAGTTCGATGCGTCAAATACTTTATTGTTAGATGATTCCCCATACAAGGCCTTGCGCAATCCAGCTAATACTGCAGTATTTCCCACTTCATATCGGTACAAGGACAGTGATGATACATCATTAGGACCTGGTGGTGATCTTCGCACTTATTTGGAGGGTGTATATACGGCAGAAAATGTTCAAAAATATGTTGAACAGAATCCATTTGGTCAAAAACCCATATCTGAATCTAGTCCATCTTGGAAATTCTACCGTAAGATTATAGATGCTTCTGCTGATGATTGA 1845 39.08 MEMAVCNAKVGLEKKRKRKQRRRGNTTSGDNRGCNLGEDNAPTENNASQESPNEMCLNMDSEMGQSHLEVNLLGEKNEEKHDDLQYGEATGISDLTFLNVKVLKEDDETSTSPNVDFCSANGKENSSVPKDPDGKATDMVKRDDEHTETIDHSTPSSHVEPQRIRKKRRRRRKGRSLEPPKESLETNIGDKRKVSLSNHPHEVETNSHLKNFVIEEVMNGVQLEESVDCPISEKTELLSAKTKESSMVITDPQKSKDFENATMVKKDDDCSETKYCLAQSNSYDTHDKTKKERKKGGRRRKFADTFEESLNSDVEDIKKDAAFNRLNEEGAISLHEHSTTTKIVKDVLVEEVSANCSVGVRTSDVKERAETIKKNVPHSLACDAANDNISATGLSKKKLLILDVNGLLVDFVPYFPDGYTPDFVISRKAVFKRPFCDDFLQFCFERFEVGIWSSRTWKNLNMLVKLLMGDSRHKLLFCWDQSHCTTTRFTTIENDRKPLVLKELKKIWENLEPNLPWKKGQFDASNTLLLDDSPYKALRNPANTAVFPTSYRYKDSDDTSLGPGGDLRTYLEGVYTAENVQKYVEQNPFGQKPISESSPSWKFYRKIIDASADD 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32070076 32074766 + CrPI670011_06g024170.1 Cre06g2417 501879

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2417 614 ProSiteProfiles FCP1 homology domain profile. 393 574 IPR004274 -
Cre06g2417 614 MobiDBLite consensus disorder prediction 112 126 - -
Cre06g2417 614 FunFam Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 351 590 - -
Cre06g2417 614 Gene3D - 347 591 IPR023214 -
Cre06g2417 614 PANTHER DULLARD PROTEIN PHOSPHATASE 175 590 IPR050365 GO:0004721(PANTHER)
Cre06g2417 614 MobiDBLite consensus disorder prediction 128 161 - -
Cre06g2417 614 MobiDBLite consensus disorder prediction 27 54 - -
Cre06g2417 614 MobiDBLite consensus disorder prediction 176 196 - -
Cre06g2417 614 SMART forpap2 396 558 IPR004274 -
Cre06g2417 614 MobiDBLite consensus disorder prediction 1 54 - -
Cre06g2417 614 MobiDBLite consensus disorder prediction 106 196 - -
Cre06g2417 614 SUPERFAMILY HAD-like 395 584 IPR036412 -
Cre06g2417 614 Pfam NLI interacting factor-like phosphatase 398 580 IPR004274 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2417 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1997 Cre-Chr7:35462365 Cre06g2417 Cre-Chr6:32070076 5.60E-81 transposed
Cre01g1505 Cre-Chr1:28292928 Cre06g2417 Cre-Chr6:32070076 3.70E-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g454 . . Bda06g00518 Bda15g00628 Bpe12g00520 . . Bma12g00961 . . Cma10g00291 Cma11g00216 Car10g00273 Car11g00195 . . Cpe04g01452 Bhi02g00084 Tan09g2026 . . . . . Cla06g01533 Cam06g1691 Cec06g1754 Cco06g1752 Clacu06g1658 Cmu06g1605 Cre06g2417 . . . Cone19ag0039 . . . . . Blo15g00342 . . Bpe07g00752 . . Bma08g00247 . Cmo10g00310 Cmo11g00218 . . . . . Cpe18g00712 . . . . . . . . . . . . . . Lsi06g01405 Csa01g00306 Chy02g02432 Cme02g01819
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010718 0 2 0 0 0 1 2 1 1 1 0 1 1 1 1 2 1 0 2 1 1 1 1 1 1 0 1 3 5 0 32