Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2424 ATGTTTTTGCAAGTGCATCGCGAGGGAGGTGAAGAAGAACAAGGCTGCTTCAAAATGGCTTTCCTAAGTAAGGTTGGAAATATACTGAGGCAGGGTGCAAATAAGAGGATTGGATTAGATTTGCAACCTTCCGGTTTGTCTATCTGTCAAGCTGTACGATGGATGTCTTCCATGCAAAGTTCAAAACTTTTTATCGGAGGAATTTCATACAGCACTGATGATCAAAGTCTCAGGGAAGCCTTTTCTAAATATGGGGAAGTAATCGAAGCTAGGGTCATTGTAGACCGCGAAACTGGAAGATCCAGAGGATTTGGATTTGTGACTTACACCTCTAGTGAGGAGGCCTCTAGTGCCATCCAGGCATTGGATGGACAGGACCTTCATGGTCGTCAAGTGAGAGTGAATTATGCTAATGATAGATCTCGTGGTTTCGGTGGTGGGGGCGGTGGTTATGGTGGCGGGGGCTATGGTGGTGGGGGCGGTGGTTATGGTGGCGGGGGCTATGGTGGTGGTGGTGCTGGAGGTTATGGTGGCGGCGGGGCTGGAGGTTATGGTGGCGGTGGGAGTGGAGGAGGTTATGGTGATGGTAGTGGTGGATATGGTTCCGGAGGCAACTATTCGAGCAGTTTTGGCGGTGGTAGCCAAGGAAATTATAGTAACGATTTTGCCAGTGCCAACCGTGGAAGTGTTGCAGGTGGTGGTGGCTTTGGTGGGAATGATGCTGGTGGCTACAACGCTGCTAGCAATTTTGCTACTGGAAACACATATGACAGTGGAACTAATGCTGGTTTTGGTAACGTCAGTGGCGGTGGCGGTGACTATTTTGCCAACAGTGGGTCCGATGCAAGCTCTGGGTTTGGAGGATACACTGGCGGGGAACAATTTGGCAGCAACGAAACAAACACCATGGATGCATCTGGAGATCAAGGCCAGGAGGAGCCACTGGAAGGAAATGATAGGGACGAAGACGACGCAGATGACTTTGCTAAAAGAGCCTGA 999 49.95 MFLQVHREGGEEEQGCFKMAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLREAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRQVRVNYANDRSRGFGGGGGGYGGGGYGGGGGGYGGGGYGGGGAGGYGGGGAGGYGGGGSGGGYGDGSGGYGSGGNYSSSFGGGSQGNYSNDFASANRGSVAGGGGFGGNDAGGYNAASNFATGNTYDSGTNAGFGNVSGGGGDYFANSGSDASSGFGGYTGGEQFGSNETNTMDASGDQGQEEPLEGNDRDEDDADDFAKRA 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32130837 32134395 + CrPI670011_06g024240.1 Cre06g2424 501886

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2424 332 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 47 141 IPR052462 GO:0003729(PANTHER)|GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0080156(PANTHER)
Cre06g2424 332 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 30 163 - -
Cre06g2424 332 MobiDBLite consensus disorder prediction 282 308 - -
Cre06g2424 332 SUPERFAMILY RNA-binding domain, RBD 58 171 IPR035979 GO:0003676(InterPro)
Cre06g2424 332 Gene3D - 52 174 IPR012677 -
Cre06g2424 332 PRINTS Eggshell protein signature 184 194 - -
Cre06g2424 332 PRINTS Eggshell protein signature 57 73 - -
Cre06g2424 332 PRINTS Eggshell protein signature 158 173 - -
Cre06g2424 332 PRINTS Eggshell protein signature 232 250 - -
Cre06g2424 332 SMART rrm1_1 62 135 IPR000504 GO:0003723(InterPro)
Cre06g2424 332 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 139 IPR000504 GO:0003723(InterPro)
Cre06g2424 332 MobiDBLite consensus disorder prediction 282 332 - -
Cre06g2424 332 CDD RRM2_NsCP33_like 62 137 IPR048289 -
Cre06g2424 332 Pfam RNA recognition motif 63 133 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2424 K12741 - - csv:101218446 223.402
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2424 Cre-Chr6:32130837 Cre10g2140 Cre-Chr10:35962099 6.80E-19 dispersed
Cre01g1580 Cre-Chr1:28906868 Cre06g2424 Cre-Chr6:32130837 1.00E-13 transposed
Cre02g1321 Cre-Chr2:16721194 Cre06g2424 Cre-Chr6:32130837 1.60E-19 transposed
Cre03g0411 Cre-Chr3:2602673 Cre06g2424 Cre-Chr6:32130837 2.90E-07 transposed
Cre04g0934 Cre-Chr4:28000808 Cre06g2424 Cre-Chr6:32130837 3.90E-18 transposed
Cre05g0480 Cre-Chr5:4348559 Cre06g2424 Cre-Chr6:32130837 1.30E-15 transposed
Cre05g1661 Cre-Chr5:27557150 Cre06g2424 Cre-Chr6:32130837 4.40E-14 transposed
Cre06g0992 Cre-Chr6:3468980 Cre06g2424 Cre-Chr6:32130837 7.10E-09 transposed
Cre07g2024 Cre-Chr7:35860019 Cre06g2424 Cre-Chr6:32130837 5.20E-10 transposed
Cre08g0819 Cre-Chr8:21288338 Cre06g2424 Cre-Chr6:32130837 4.70E-14 transposed
Cre10g1990 Cre-Chr10:34593284 Cre06g2424 Cre-Chr6:32130837 3.10E-20 transposed
Cre10g2210 Cre-Chr10:36585787 Cre06g2424 Cre-Chr6:32130837 7.20E-14 transposed
Cre11g0929 Cre-Chr11:6537264 Cre06g2424 Cre-Chr6:32130837 2.40E-20 transposed
Cre01g1515 Cre-Chr1:28360031 Cre06g2424 Cre-Chr6:32130837 1.50E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g657 Blo04g00789 Blo16g00169 Bda06g00522 Bda15g00622 . Bpe13g00312 Bma06g00152 Bma12g00965 Cmo13g01121 . . . . . Sed08g0275 Cpe20g00073 Cpe04g01460 Bhi02g00095 Tan09g2044 Cmetu02g1487 . Hepe09g0273 . . Cla06g01539 Cam06g1698 Cec06g1760 Cco06g1759 Clacu06g1665 Cmu06g1611 Cre06g2424 Cone2ag0802 Cone16ag0207 Cone13ag0035 Cone19ag0044 Lsi02g00118 Csa01g00598 Chy12g01500 Cme12g01944 . Blo15g00338 Bda11g01723 Bda14g00879 Bpe07g00756 Bpe15g00581 Bma03g00850 . Sed08g2119 . Cmo11g00211 Cma13g01075 . Car13g00911 Car18g00005 . Cpe18g00707 Bhi08g01085 Tan05g2363 Cmetu12g0852 Lac10g0147 Hepe07g2465 . . Cla04g01155 Cam04g1213 Cec01g1724 Cco01g1769 Clacu04g1240 Cmu04g1219 Cre01g1515 Lsi06g01412 Csa01g00294 Chy02g02442 Cme02g01829
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000800 6 2 2 5 5 2 3 2 2 3 2 2 5 3 2 4 2 6 3 2 2 3 3 2 2 2 2 8 3 2 92