Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2435 ATGTGCGTCACCCGCGTTCGCCAAGCGGGTGAACCTTATTACCAACGAAACGACGAGCTTGGTGTTGCAATGCTTCCAGATTTTGAAGTAGCTCCTTTAGAAGAAGGAGGCGTAGAGAAATACATAACCTCCATAGCATTCACCAAAGCAATTATATCGAGGCTGAGTCGTCGAGACTTGAGAGCCAGTCAAGAGATGTCGACACAAGCGAATGATCCACGGCAGCCGTCGGCGGCGAAGCCTTTTGTTGCTCCGGCAGTGAATCCACAAGATCTTCCCGTTGATTATTCCGGTTTCATCGCCGTAGTTTTCGGCATCGCCGGTGTCATGTTCAGGTACAAGCTTAGTTCGTGGCTAGCCATCATATTTTGCGCCCAATCGCTTGCGAACATGAGGAATGTTGAGAACGATCTCAAGCAGATTTCCATGGCCATGATGTTTGCTATTATGGGATTAGTGACAAATTACTTGGGACCTGCGCGACCAGGAACAAAAAGGATGAAACCAAATCCAAAGGCACAAAAATCAACATGA 534 47.75 MCVTRVRQAGEPYYQRNDELGVAMLPDFEVAPLEEGGVEKYITSIAFTKAIISRLSRRDLRASQEMSTQANDPRQPSAAKPFVAPAVNPQDLPVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCAQSLANMRNVENDLKQISMAMMFAIMGLVTNYLGPARPGTKRMKPNPKAQKST 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32205156 32211574 + CrPI670011_06g024350.1 Cre06g2435 501897

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2435 177 Pfam PAT complex subunit Asterix 70 163 IPR005351 GO:0005789(InterPro)|GO:0044183(InterPro)|GO:0045048(InterPro)
Cre06g2435 177 MobiDBLite consensus disorder prediction 62 81 - -
Cre06g2435 177 PANTHER CGI-140 66 166 IPR005351 GO:0005789(InterPro)|GO:0030176(PANTHER)|GO:0044183(PANTHER)|GO:0044183(InterPro)|GO:0045048(PANTHER)|GO:0045048(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2435 K24963 - - csv:101206749 196.052
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0975 Cre-Chr4:28370685 Cre06g2435 Cre-Chr6:32205156 4.00E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g637 . . . . . . . . . . Cma10g00228 . Car10g00213 Car11g00179 Sed08g0258 . Cpe04g01468 Bhi02g00695 Tan09g2054 Cmetu02g0232 . . . . Cla06g01548 Cam06g1709 Cec06g1769 Cco06g1770 Clacu06g1676 Cmu06g1622 Cre06g2435 Cone2ag0818 . . . . . . . . . . . . . . . . Cmo10g00240 Cmo11g00203 . . . . . Cpe18g00765 . . . . . . . . . . . . . . Lsi06g01423 Csa01g00281 Chy02g02453 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004880 2 1 0 5 2 1 2 1 1 0 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 2 2 1 39