Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2439 ATGCTGCAGAGTTGGTTTCTCAAAACGTGTAAGAACCTCACTTTGCAGCTTTCAAAATCTGACTTTTCTTTGCTTGGTGAAAGTTGCATAGCTCTCTTTAACTTGACTATCTTCTTCACTAGTCAACATAACCCCTTCAAGTTTATAGAGGCTCCAACTGAGGAAAATGGTGAAGATCTGCTGCATTGGAGCTGGATCTTAGCTTGGAATAGTGACCAACTCCCCATATATGAGCCTGGTCTTGATGAAGTAGTGAAGCAGTGCAGAGGAAAGAATCTATTTTTCAGCACAAATGTTGAAAGGCACATCTCAGAGGCTGACATAATCTTTGTTTCAGTAAACACTCCAACGAAAACTCGAGGCCTTGGAGCTGGCAAAGCTGCAGATCTCACATATTGGGAGAGCGCAGCTCGAATGATTGCCGATGTATCAAAATCGGACAAGATTGTTGTTGAAAAATCAACTGTTCCAGTTAAAACAGCAGAGGCAATAGAAAAAATCCTTACTCACAGTAGCAAGGGAATCAAATATCAGATTCTCTCAAATCCAGAGTTCCTTGCTGAGGGTACTGCTATTAGAGATTTATTTAACCCCGACCGGGTTCTCATAGGAGGGAGAGAAACTCCGGACGGTCTCAAGGCAATTCAGGCTTTGAAGAGTGTATATGCTCAATGGGTGCCTGAAGAAAGAATTCTCACCACTAATCTTTGGTCAGCAGAGCTCTCAAAATTAGCTGCTAACGCATTTCTGGCCCAAAGGATCTCATCTATCAATGCCATGTCCGCACTCTGTGAGGCTACTGGTGCAGACGTGTCACAGGTATCCCACGCCATTGGAACAGATACTAGAATTGGACCCAAGTTCCTAAATGCTAGTGTTGGTTTTGGTGGATCATGTTTTCAGAAGGACATTCTCAATTTGATTTATATTTGTGAATGCAATGGCTTGAATGAAGTTGCAAGCTACTGGAAACAAGTGATAAAGGTCAACGACTACCAAAAGAATCGATTTGTGAACCGGGTTGTCTCTTCAATGTTCAATACAGTTTCAGGCAAAAAGATAGCAATCCTTGGCTTTGCTTTCAAGAAGGATACAGGTGACACAAGGGAAACTCCTGCAATCGATGTCTGCAAGGGACTTTTAGGGGACAAGGCAAAACTGAGTGTATATGATCCACAAGTAACTGAGGATCAGATTCAGAGGGACTTATCAATGAGCAAGTTTGATTGGGACCATCCAATCCACTTGCAGCCAGTGAGCCCAACTGCGGCAAAGGAAGTCAGTTTTGCTTGGGACCCATATGAGGCGACTAAAGATGCTCATGGACTCTGCATTCTAACTGAATGGGATGAATTCAAGACTCTTGATTTTCAAAGGATTTTTAAACAAATGCAGAAACCTGCATTTGTTTTTGATGGCAGAAATGTTGTTGATGTTCAAAAGCTGAGGGAGATTGGATTCATAGTGTATTCCATTGGAAAACCACTGGATCCATGGCTCAAGGATATGCCCGTAATGGCATAG 1524 42.52 MLQSWFLKTCKNLTLQLSKSDFSLLGESCIALFNLTIFFTSQHNPFKFIEAPTEENGEDLLHWSWILAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTNVERHISEADIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHSSKGIKYQILSNPEFLAEGTAIRDLFNPDRVLIGGRETPDGLKAIQALKSVYAQWVPEERILTTNLWSAELSKLAANAFLAQRISSINAMSALCEATGADVSQVSHAIGTDTRIGPKFLNASVGFGGSCFQKDILNLIYICECNGLNEVASYWKQVIKVNDYQKNRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSVYDPQVTEDQIQRDLSMSKFDWDHPIHLQPVSPTAAKEVSFAWDPYEATKDAHGLCILTEWDEFKTLDFQRIFKQMQKPAFVFDGRNVVDVQKLREIGFIVYSIGKPLDPWLKDMPVMA 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32252983 32255283 - CrPI670011_06g024390.1 Cre06g2439 501901

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2439 507 Gene3D - 268 503 - -
Cre06g2439 507 FunFam UDP-glucose 6-dehydrogenase 61 235 - -
Cre06g2439 507 Gene3D - 62 235 - -
Cre06g2439 507 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 68 229 IPR036291 -
Cre06g2439 507 SMART UDPG_MGDP_dh_C_a_2_a 355 479 IPR014027 GO:0016616(InterPro)|GO:0051287(InterPro)
Cre06g2439 507 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 66 497 IPR028356 GO:0003979(InterPro)|GO:0005634(PANTHER)|GO:0006024(PANTHER)
Cre06g2439 507 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 237 331 IPR014026 GO:0016616(InterPro)|GO:0051287(InterPro)
Cre06g2439 507 NCBIfam nucleotide sugar dehydrogenase 70 475 IPR017476 GO:0016616(InterPro)
Cre06g2439 507 PIRSF UDPglc_DH_euk 61 506 IPR028356 GO:0003979(InterPro)
Cre06g2439 507 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 342 490 IPR036220 -
Cre06g2439 507 FunFam UDP-glucose 6-dehydrogenase 268 505 - -
Cre06g2439 507 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 66 211 IPR001732 GO:0016616(InterPro)|GO:0051287(InterPro)
Cre06g2439 507 Gene3D - 236 267 - -
Cre06g2439 507 PIRSF UDPglc_GDPman_dh 64 494 IPR017476 GO:0016616(InterPro)
Cre06g2439 507 FunFam UDP-glucose 6-dehydrogenase 236 267 - -
Cre06g2439 507 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 355 478 IPR014027 GO:0016616(InterPro)|GO:0051287(InterPro)
Cre06g2439 507 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 237 336 IPR008927 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2439 K00012 - - csv:101206505 872.078
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2439 Cre-Chr6:32252983 Cre07g1098 Cre-Chr7:20343763 6.50E-231 dispersed
Cre06g2438 Cre-Chr6:32243445 Cre06g2439 Cre-Chr6:32252983 1.00E-257 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g626 . . . . . . . . . . Cma10g00227 . Car10g00212 . . . . . . . . . . . Cla06g01552 Cam06g1713 Cec06g1774 Cco06g1775 Clacu06g1681 Cmu06g1626 Cre06g2439 . . Cone2ag0525 Cone16ag0488 . . . . . . . . . . . . . Cmo10g00238 . . . . . . Cpe18g00766 . . . . . . . . . . . . . . Lsi06g01426 Csa01g00279 Chy02g02454 Cme02g01842
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000749 3 5 3 2 3 4 3 4 4 3 3 4 3 3 3 3 4 5 3 4 4 2 2 3 3 3 2 2 3 2 95