Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2477 ATGGCGTTTCTTGGATTTCTCTTGGTGGGTCTTCTTCTTTCTTTGGGATGTCATTCTGCTCTTGGTCACAACAATGGAGGAGGTTGGATCGATGCTCACGCCACATTCTACGGTGGGGGCGACGCCGCTGGTACAATGGGAGGGGCTTGTGGCTATGGAAATCTGTACAGCCAGGGATATGGGACGAACACAGCAGCTCTGAGTACATCCTTATTCAACAATGGACTGAGCTGTGGCGCTTGCTTTGAAATCAGATGTGTAAATGATGCAAAATGGTGTCTTCCAAACTCCATTGTCGTCACTGCTACGAACTTTTGTCCGCCGAACAATGCGCTCCCCAACAACGCCGGCGGCTGGTGCAACCCTCCCCAACACCATTTTGATCTCTCCCAACCCGTGTTCCAGCAAATCGCTCATTACAAAGCCGGCATTGTTCCAGTGGCATACAGAAGGGTGTCTTGTGAGAAGAAAGGAGGCATTAGATTCACTATCAATGGCCATTCTTACTTCAATTTAGTTCTTGTAACCAACGTTGGGGGAGGTGGGGATGTTCATGGCGTGTGGATCAAAGGGTCGAAAACAGGGTGGGAAGCAATGTCGAGGAACTGGGGACAGAATTGGCAGAGCAATTCATATTTGAATGGACAGAGTTTGTCGTTCAAAGTGATGACCGGCGATGGCCGGACGGTGATATCCAACGACGTGGCGCCAGCTGGGTGGAGCTTTGGTCAGACGTTTAGTGGGGTGCAGTTCTGA 756 50.4 MAFLGFLLVGLLLSLGCHSALGHNNGGGWIDAHATFYGGGDAAGTMGGACGYGNLYSQGYGTNTAALSTSLFNNGLSCGACFEIRCVNDAKWCLPNSIVVTATNFCPPNNALPNNAGGWCNPPQHHFDLSQPVFQQIAHYKAGIVPVAYRRVSCEKKGGIRFTINGHSYFNLVLVTNVGGGGDVHGVWIKGSKTGWEAMSRNWGQNWQSNSYLNGQSLSFKVMTGDGRTVISNDVAPAGWSFGQTFSGVQF 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32556763 32557666 + CrPI670011_06g024770.1 Cre06g2477 501939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2477 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 159 IPR007112 -
Cre06g2477 251 SMART dpbb_1 64 149 IPR007112 -
Cre06g2477 251 FunFam Expansin 18 155 - -
Cre06g2477 251 CDD DPBB_EXPA_N 28 154 - -
Cre06g2477 251 PANTHER EXPANSIN-A15 19 251 IPR002963 GO:0009664(InterPro)
Cre06g2477 251 Gene3D - 156 251 IPR036749 -
Cre06g2477 251 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576(InterPro)
Cre06g2477 251 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576(InterPro)
Cre06g2477 251 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576(InterPro)
Cre06g2477 251 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576(InterPro)
Cre06g2477 251 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576(InterPro)
Cre06g2477 251 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576(InterPro)
Cre06g2477 251 FunFam Expansin 159 251 - -
Cre06g2477 251 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Cre06g2477 251 SUPERFAMILY Barwin-like endoglucanases 28 177 IPR036908 -
Cre06g2477 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Cre06g2477 251 PRINTS Expansin signature 170 191 IPR002963 GO:0009664(InterPro)
Cre06g2477 251 PRINTS Expansin signature 98 108 IPR002963 GO:0009664(InterPro)
Cre06g2477 251 PRINTS Expansin signature 134 147 IPR002963 GO:0009664(InterPro)
Cre06g2477 251 PRINTS Expansin signature 205 226 IPR002963 GO:0009664(InterPro)
Cre06g2477 251 PRINTS Expansin signature 234 250 IPR002963 GO:0009664(InterPro)
Cre06g2477 251 PRINTS Expansin signature 86 97 IPR002963 GO:0009664(InterPro)
Cre06g2477 251 PRINTS Expansin signature 117 134 IPR002963 GO:0009664(InterPro)
Cre06g2477 251 PRINTS Expansin signature 59 73 IPR002963 GO:0009664(InterPro)
Cre06g2477 251 PRINTS Expansin signature 158 170 IPR002963 GO:0009664(InterPro)
Cre06g2477 251 SUPERFAMILY PHL pollen allergen 156 247 IPR036749 -
Cre06g2477 251 Pfam Lytic transglycolase 64 149 IPR009009 -
Cre06g2477 251 Gene3D - 16 155 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2477 Cre-Chr6:32556763 Cre11g1406 Cre-Chr11:18373768 4.80E-110 dispersed
Cre01g1547 Cre-Chr1:28666400 Cre06g2477 Cre-Chr6:32556763 1.90E-92 wgd
Cre01g0644 Cre-Chr1:5873567 Cre06g2477 Cre-Chr6:32556763 9.70E-108 wgd
Cre05g2585 Cre-Chr5:37029535 Cre06g2477 Cre-Chr6:32556763 2.60E-116 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2477 - - - 0.0