Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2478 ATGGCCACTGTCACTACTCAAGCTTCCGCCGCCGTTTTCCGGCCATGCGCCGCCCGATCCAGATTCCTTTCAGGTTCTTCCGGTAAACTCCACCGTGAGCTCTCGGTTAAACCAGTCTCTGCTTCGTCGTCTTCATCTTTCAAGGTTGAAGCCAAGAAGGGAGAATGGTTGCCTGGTCTGCCATCTCCGGCGTACTTAAATGGCAGTCTTCCGGGCGACAATGGATTTGACCCACTGGGTTTAGCGGAAGACCCAGAGAATTTGAGGTGGTTCGTACAAGCGGAGCTGGTGAATGGGAGGTGGGCTATGCTGGGTGTCGCCGGAATGCTTTTGCCGGAGGTTTTCACGAAGATCGGAATTATCAACGCCCCTCAATGGTACGACGCCGGAAAGGCAGAGTACTTCGCCTCGTCGTCAACTCTGTTCGTGATCGAGTTTATCCTCTTCCATTACGTCGAAATCCGCAGATGGCAAGACATTAAAAACCCTGGCTGCGTTAACCAAGACCCCATTTTCAAGCAATACAGTTTGCCCCCAAATGAATGTGGTTACCCTGGTGGGATTTTCAATCCCCTGAATTTTGCCCCCACTCTTGAAGCCAAAGAGAAGGAATTAGCCAATGGGAGACTTGCGATGTTGGCGTTCTTGGGATTCATTGTGCAACACAATGTGACAGGGAAGGGGCCATTTGACAACCTATTGCAGCACATTTCAGACCCATGGCACAACACCATTGTCCAGACATTTGGTGGCAACTAA 759 50.99 MATVTTQASAAVFRPCAARSRFLSGSSGKLHRELSVKPVSASSSSSFKVEAKKGEWLPGLPSPAYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPNECGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDPWHNTIVQTFGGN 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32560685 32561871 + CrPI670011_06g024780.1 Cre06g2478 501940

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2478 252 Gene3D Chlorophyll a/b binding protein domain 63 242 - -
Cre06g2478 252 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 16 245 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Cre06g2478 252 FunFam Chlorophyll a-b binding protein, chloroplastic 63 242 - -
Cre06g2478 252 SUPERFAMILY Chlorophyll a-b binding protein 53 249 - -
Cre06g2478 252 Pfam Chlorophyll A-B binding protein 63 222 IPR022796 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2478 K08910 - - csv:101222701 496.508
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2478 Cre-Chr6:32560685 Cre08g1539 Cre-Chr8:28010777 6.40E-54 dispersed
Cre01g0412 Cre-Chr1:3497783 Cre06g2478 Cre-Chr6:32560685 1.50E-39 transposed
Cre11g1792 Cre-Chr11:29505023 Cre06g2478 Cre-Chr6:32560685 5.20E-62 transposed
Cre01g1548 Cre-Chr1:28670063 Cre06g2478 Cre-Chr6:32560685 1.50E-132 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g566 Blo04g00773 . Bda06g00542 Bda15g00608 Bpe12g00541 . . Bma12g00994 . . . Cma11g00139 Car10g00187 Car11g00156 . . Cpe04g01495 . . . . . . . Cla06g01586 Cam06g1755 Cec06g1811 Cco06g1814 Clacu06g1721 Cmu06g1664 Cre06g2478 Cone2ag0840 Cone16ag0175 . . Lsi02g00081 Csa01g00560 Chy12g01533 Cme12g01983 Blo13g00003 Blo15g00312 . . Bpe07g00779 . . Bma08g00227 Sed08g2078 Cmo10g00213 Cmo11g00172 . . . . . Cpe18g00788 Bhi08g01147 Tan05g2431 Cmetu02g0368 Lac10g0087 Hepe07g2501 . . Cla04g01190 Cam04g1247 Cec01g1758 Cco01g1804 Clacu04g1276 Cmu04g1254 Cre01g1547 . Csa01g00241 Chy02g02491 Cme02g01877
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre03g0477 . 1 451 Chloroplast and Mitochondria Gene Families AT2G28800 61.2 2.2e-139 492.7
Cre08g1688 . 71 432 Chloroplast and Mitochondria Gene Families AT2G28800 55.0 2.1e-100 363.2
Cre08g0640 . 3 255 Chloroplast and Mitochondria Gene Families AT1G15820 82.4 4.1e-120 427.9
Cre02g0613 . 1 265 Chloroplast and Mitochondria Gene Families AT3G27690 88.7 1.1e-142 503.1
Cre02g2152 . 2 267 Chloroplast and Mitochondria Gene Families AT3G27690 78.4 7.2e-121 430.6
Cre04g2048 . 2 265 Chloroplast and Mitochondria Gene Families AT3G27690 77.4 3.6e-120 428.3
Cre04g2049 . 2 265 Chloroplast and Mitochondria Gene Families AT3G27690 76.7 3.0e-119 425.2
Cre10g1333 . 1 265 Chloroplast and Mitochondria Gene Families AT3G27690 77.6 5.2e-119 424.5
Cre03g1026 . 2 265 Chloroplast and Mitochondria Gene Families AT3G27690 76.7 6.8e-119 424.1
Cre10g0841 . 5 266 Chloroplast and Mitochondria Gene Families AT3G27690 66.9 1.2e-96 350.1
Cre08g0169 . 109 312 Chloroplast and Mitochondria Gene Families AT3G27690 53.8 7.1e-52 201.4
Cre11g1792 . 3 268 Chloroplast and Mitochondria Gene Families AT3G61470 80.5 1.1e-128 456.4
Cre03g1766 . 56 261 Chloroplast and Mitochondria Gene Families AT3G61470 66.0 1.3e-86 316.6
Cre06g2478 . 22 249 Chloroplast and Mitochondria Gene Families AT3G61470 50.8 9.2e-64 240.7
Cre01g0412 . 1 198 Chloroplast and Mitochondria Gene Families AT3G54890 81.1 8.1e-90 327.0
Cre04g0814 . 3 285 Chloroplast and Mitochondria Gene Families AT3G08940 82.4 8.5e-135 476.9
Cre10g2308 . 2 267 Chloroplast and Mitochondria Gene Families AT3G08940 83.9 9.4e-126 446.8
Cre11g2304 . 60 322 Chloroplast and Mitochondria Gene Families AT1G76570 81.0 1.6e-129 459.5
Cre03g1546 . 1 273 Chloroplast and Mitochondria Gene Families AT1G61520 86.4 1.9e-136 482.3
Cre02g0613 . 1 265 Chloroplast and Mitochondria Gene Families AT2G05070 89.4 3.2e-144 508.1
Cre04g2048 . 5 265 Chloroplast and Mitochondria Gene Families AT2G05070 79.3 1.1e-120 429.9
Cre04g2049 . 5 265 Chloroplast and Mitochondria Gene Families AT2G05070 78.6 5.4e-120 427.6
Cre02g2152 . 7 267 Chloroplast and Mitochondria Gene Families AT2G05070 78.9 7.1e-120 427.2
Cre03g1026 . 5 265 Chloroplast and Mitochondria Gene Families AT2G05070 78.2 3.5e-119 424.9
Cre10g1333 . 27 265 Chloroplast and Mitochondria Gene Families AT2G05070 84.5 1.3e-118 422.9
Cre10g0841 . 7 266 Chloroplast and Mitochondria Gene Families AT2G05070 68.0 3.8e-97 351.7
Cre08g0169 . 109 312 Chloroplast and Mitochondria Gene Families AT2G05070 54.3 4.9e-52 201.8
Cre02g0613 . 1 237 Chloroplast and Mitochondria Gene Families AT2G05100 89.5 1.8e-125 446.0
Cre04g2048 . 5 237 Chloroplast and Mitochondria Gene Families AT2G05100 76.9 6.1e-102 367.9
Cre04g2049 . 5 237 Chloroplast and Mitochondria Gene Families AT2G05100 76.4 1.8e-101 366.3
Cre02g2152 . 7 239 Chloroplast and Mitochondria Gene Families AT2G05100 76.9 5.2e-101 364.8
Cre03g1026 . 5 237 Chloroplast and Mitochondria Gene Families AT2G05100 76.5 1.2e-100 363.6
Cre10g1333 . 8 237 Chloroplast and Mitochondria Gene Families AT2G05100 78.4 1.2e-100 363.6
Cre10g0841 . 7 238 Chloroplast and Mitochondria Gene Families AT2G05100 67.6 5.4e-82 301.6
Cre08g0169 . 109 296 Chloroplast and Mitochondria Gene Families AT2G05100 53.1 1.7e-43 173.7
Cre04g0814 . 3 167 Chloroplast and Mitochondria Gene Families AT2G40100 72.8 8.3e-67 250.4
Cre10g2308 . 2 164 Chloroplast and Mitochondria Gene Families AT2G40100 66.7 9.9e-60 226.9
Cre02g2152 . 1 267 Chloroplast and Mitochondria Gene Families AT1G29930 88.4 1.9e-136 482.3
Cre04g2048 . 1 265 Chloroplast and Mitochondria Gene Families AT1G29930 88.8 4.2e-136 481.1
Cre04g2049 . 1 265 Chloroplast and Mitochondria Gene Families AT1G29930 88.4 7.1e-136 480.3
Cre03g1026 . 1 265 Chloroplast and Mitochondria Gene Families AT1G29930 87.3 2.1e-135 478.8
Cre10g1333 . 10 265 Chloroplast and Mitochondria Gene Families AT1G29930 85.3 2.3e-126 448.7
Cre02g0613 . 3 265 Chloroplast and Mitochondria Gene Families AT1G29930 78.3 3.7e-116 414.8
Cre10g0841 . 1 266 Chloroplast and Mitochondria Gene Families AT1G29930 65.2 1.0e-94 343.6
Cre02g2152 . 1 267 Chloroplast and Mitochondria Gene Families AT1G29920 88.1 7.1e-136 480.3
Cre04g2048 . 1 265 Chloroplast and Mitochondria Gene Families AT1G29920 88.4 1.6e-135 479.2
Cre04g2049 . 1 265 Chloroplast and Mitochondria Gene Families AT1G29920 88.0 2.7e-135 478.4
Cre03g1026 . 1 265 Chloroplast and Mitochondria Gene Families AT1G29920 86.9 7.9e-135 476.9
Cre10g1333 . 10 265 Chloroplast and Mitochondria Gene Families AT1G29920 85.3 3.0e-126 448.4
Cre02g0613 . 3 265 Chloroplast and Mitochondria Gene Families AT1G29920 77.9 2.2e-116 415.6
Cre10g0841 . 1 266 Chloroplast and Mitochondria Gene Families AT1G29920 65.2 1.8e-94 342.8
Cre08g0169 . 92 312 Chloroplast and Mitochondria Gene Families AT1G29920 50.7 7.6e-53 204.5
Cre02g2152 . 1 267 Chloroplast and Mitochondria Gene Families AT1G29910 88.1 7.1e-136 480.3
Cre04g2048 . 1 265 Chloroplast and Mitochondria Gene Families AT1G29910 88.4 1.6e-135 479.2
Cre04g2049 . 1 265 Chloroplast and Mitochondria Gene Families AT1G29910 88.0 2.7e-135 478.4
Cre03g1026 . 1 265 Chloroplast and Mitochondria Gene Families AT1G29910 86.9 7.9e-135 476.9
Cre10g1333 . 10 265 Chloroplast and Mitochondria Gene Families AT1G29910 85.3 3.0e-126 448.4
Cre02g0613 . 3 265 Chloroplast and Mitochondria Gene Families AT1G29910 77.9 2.2e-116 415.6
Cre10g0841 . 1 266 Chloroplast and Mitochondria Gene Families AT1G29910 65.2 1.8e-94 342.8
Cre08g0169 . 92 312 Chloroplast and Mitochondria Gene Families AT1G29910 50.7 7.6e-53 204.5
Cre08g0169 . 47 327 Chloroplast and Mitochondria Gene Families AT4G10340 84.7 5.5e-139 490.7
Cre04g2049 . 37 253 Chloroplast and Mitochondria Gene Families AT4G10340 52.9 4.1e-57 218.8
Cre03g1026 . 49 253 Chloroplast and Mitochondria Gene Families AT4G10340 54.1 6.9e-57 218.0
Cre04g2048 . 37 253 Chloroplast and Mitochondria Gene Families AT4G10340 52.5 6.9e-57 218.0
Cre02g2152 . 51 255 Chloroplast and Mitochondria Gene Families AT4G10340 54.1 1.2e-56 217.2
Cre10g1333 . 49 253 Chloroplast and Mitochondria Gene Families AT4G10340 54.1 1.2e-56 217.2
Cre02g0613 . 49 253 Chloroplast and Mitochondria Gene Families AT4G10340 52.6 3.2e-54 209.1
Cre10g0841 . 48 254 Chloroplast and Mitochondria Gene Families AT4G10340 54.0 3.9e-52 202.2
Cre02g2152 . 1 267 Chloroplast and Mitochondria Gene Families AT2G34420 88.4 1.2e-135 479.6
Cre04g2048 . 1 265 Chloroplast and Mitochondria Gene Families AT2G34420 88.0 1.7e-134 475.7
Cre03g1026 . 1 265 Chloroplast and Mitochondria Gene Families AT2G34420 87.3 3.0e-134 474.9
Cre04g2049 . 1 265 Chloroplast and Mitochondria Gene Families AT2G34420 87.6 3.0e-134 474.9
Cre10g1333 . 10 265 Chloroplast and Mitochondria Gene Families AT2G34420 85.7 4.6e-127 451.1
Cre02g0613 . 3 265 Chloroplast and Mitochondria Gene Families AT2G34420 77.2 7.4e-117 417.2
Cre10g0841 . 24 266 Chloroplast and Mitochondria Gene Families AT2G34420 70.1 8.8e-94 340.5
Cre04g2049 . 1 265 Chloroplast and Mitochondria Gene Families AT2G34430 88.3 8.4e-137 483.4
Cre04g2048 . 1 265 Chloroplast and Mitochondria Gene Families AT2G34430 88.3 3.2e-136 481.5
Cre02g2152 . 1 267 Chloroplast and Mitochondria Gene Families AT2G34430 88.1 2.1e-135 478.8
Cre03g1026 . 1 265 Chloroplast and Mitochondria Gene Families AT2G34430 86.5 2.7e-135 478.4
Cre10g1333 . 11 265 Chloroplast and Mitochondria Gene Families AT2G34430 86.3 6.4e-129 457.2
Cre02g0613 . 31 265 Chloroplast and Mitochondria Gene Families AT2G34430 83.2 2.0e-114 409.1
Cre10g0841 . 36 266 Chloroplast and Mitochondria Gene Families AT2G34430 70.5 8.8e-94 340.5
Cre04g0814 . 2 285 Chloroplast and Mitochondria Gene Families AT5G01530 83.5 1.3e-138 489.6
Cre10g2308 . 2 267 Chloroplast and Mitochondria Gene Families AT5G01530 86.6 1.4e-132 469.5
Cre10g0922 . 109 366 Chloroplast and Mitochondria Gene Families AT5G40810 93.8 1.3e-142 502.7
Cre10g0922 . 62 366 Chloroplast and Mitochondria Gene Families AT3G27240 85.6 2.5e-148 521.9
Cre02g2238 . 5 327 Chloroplast and Mitochondria Gene Families AT2G30160 75.3 7.5e-143 503.8
Cre04g0775 . 9 311 Chloroplast and Mitochondria Gene Families AT2G30160 64.2 7.5e-111 397.5
Cre02g2238 . 5 323 Chloroplast and Mitochondria Gene Families AT1G07030 76.4 3.3e-143 505.0
Cre04g0775 . 5 311 Chloroplast and Mitochondria Gene Families AT1G07030 67.5 1.4e-117 419.9
Cre09g0527 . 1 305 Chloroplast and Mitochondria Gene Families AT2G47490 76.4 1.1e-135 479.9
Cre09g1945 . 9 312 Chloroplast and Mitochondria Gene Families AT2G47490 63.5 2.1e-110 396.0
Cre09g1945 . 10 364 Chloroplast and Mitochondria Gene Families AT1G25380 63.7 5.5e-123 438.0
Cre09g0527 . 11 297 Chloroplast and Mitochondria Gene Families AT1G25380 64.6 2.1e-106 382.9
Cre03g0841 . 5 584 Chloroplast and Mitochondria Gene Families AT4G21490 75.2 6.9e-261 896.7
Cre02g2041 . 1 585 Chloroplast and Mitochondria Gene Families AT4G21490 70.1 1.9e-242 835.5
Cre02g0470 . 1 574 Chloroplast and Mitochondria Gene Families AT4G21490 64.7 9.4e-226 780.0
Cre09g0071 . 5 186 Chloroplast and Mitochondria Gene Families AT1G17530 64.3 3.6e-62 235.0
Cre06g1740 . 4 179 Chloroplast and Mitochondria Gene Families AT1G17530 58.4 2.2e-51 199.1
Cre06g1740 . 12 183 Chloroplast and Mitochondria Gene Families AT3G04800 59.0 2.9e-51 198.7
Cre09g0071 . 22 186 Chloroplast and Mitochondria Gene Families AT3G04800 53.9 1.6e-41 166.4
Cre09g0071 . 15 187 Chloroplast and Mitochondria Gene Families AT1G72750 68.0 2.2e-62 235.7
Cre06g1740 . 5 183 Chloroplast and Mitochondria Gene Families AT1G72750 58.2 4.1e-53 204.9
Cre05g2484 . 663 837 Chloroplast and Mitochondria Gene Families AT1G26100 69.1 4.8e-67 251.5
Cre11g1018 . 1 226 Chloroplast and Mitochondria Gene Families AT5G38630 70.9 2.3e-90 328.9
Cre09g1265 . 23 230 Chloroplast and Mitochondria Gene Families AT4G25570 67.6 3.6e-82 302.0
Cre09g1856 . 2 219 Chloroplast and Mitochondria Gene Families AT1G14730 53.2 9.4e-65 243.8
Cre09g1754 . 9 356 Chloroplast and Mitochondria Gene Families AT5G14040 82.3 2.4e-169 592.0
Cre05g1439 . 10 357 Chloroplast and Mitochondria Gene Families AT5G14040 77.2 6.4e-159 557.4
Cre06g2681 . 39 340 Chloroplast and Mitochondria Gene Families AT5G14040 86.4 1.3e-154 543.1
Cre02g0667 . 11 298 Chloroplast and Mitochondria Gene Families AT5G14040 51.9 3.4e-83 305.8
Cre09g1754 . 8 356 Chloroplast and Mitochondria Gene Families AT3G48850 72.0 7.9e-146 513.8
Cre05g1439 . 11 363 Chloroplast and Mitochondria Gene Families AT3G48850 71.1 3.7e-143 505.0
Cre06g2681 . 10 340 Chloroplast and Mitochondria Gene Families AT3G48850 68.7 5.9e-141 497.7
Cre02g0667 . 11 297 Chloroplast and Mitochondria Gene Families AT3G48850 50.5 3.0e-84 309.3
Cre02g0667 . 14 308 Chloroplast and Mitochondria Gene Families AT2G17270 76.9 3.8e-133 471.5
Cre05g1439 . 64 362 Chloroplast and Mitochondria Gene Families AT2G17270 52.5 1.7e-88 323.2
Cre09g1754 . 62 352 Chloroplast and Mitochondria Gene Families AT2G17270 52.6 5.1e-85 311.6
Cre11g0975 . 71 374 Chloroplast and Mitochondria Gene Families AT5G15640 76.5 3.7e-131 464.9
Cre05g1982 . 120 433 Chloroplast and Mitochondria Gene Families AT5G26200 64.3 2.0e-111 399.4
Cre09g0075 . 96 439 Chloroplast and Mitochondria Gene Families AT5G26200 57.8 4.1e-104 375.2
Cre09g0075 . 96 443 Chloroplast and Mitochondria Gene Families AT1G72820 76.1 1.1e-147 520.0
Cre05g1982 . 109 433 Chloroplast and Mitochondria Gene Families AT1G72820 66.5 3.9e-118 421.8
Cre09g2279 . 82 285 Chloroplast and Mitochondria Gene Families AT5G52570 52.0 5.2e-50 194.9
Cre05g1024 . 1 219 Chloroplast and Mitochondria Gene Families AT4G25700 63.2 1.3e-69 260.0
Cre09g2279 . 69 204 Chloroplast and Mitochondria Gene Families AT4G25700 74.3 1.6e-56 216.5
Cre02g0484 . 149 327 Chloroplast and Mitochondria Gene Families AT4G03320 52.2 9.2e-57 217.6
Cre10g0843 . 72 359 Chloroplast and Mitochondria Gene Families AT5G54290 79.0 7.3e-120 427.6
Cre06g2162 . 126 616 Chloroplast and Mitochondria Gene Families AT2G18710 85.4 4.6e-238 820.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001994 2 2 3 3 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 3 2 1 66