Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2487 ATGGACGCCACTTGGAGGCCGAAGTGTGAAGTAATGGCCTTTGAAGATTCTTTTCCTTTATCTTGTCAACTTTCTCCTCTCCCTTTTAGATCAAGCTACAACAATTATTCTGGATTGGATTGGAATTGCAACTTTGGGTTGCAAGATAACATTTTTGAAGTTGTTCCTTTGTTGGAGAGTTTCCCAAATAATGACTCGTTTTTGGAATCAAAGGATATAGTGCCTATTAACACCTTTATATCAGAAGATGGGGTTGGGATTTGGAGTGAAATGGAAAATGGGATATTTGGCTTTGTTGAGGAAGAACCTGTTTTATTGCTAGAAGGAGAAGATGGTGGAGGAAATGAAGAAAATAGAGAAGTGATGAAGAAGGGGAAAAGAAAGTATTTGAGATCAGAAAATAGCAAAAACAATGGGAGTTATTCAACATCATCATCATCTTCAAAAATGTTGTCAAGAAAAGCAATATCTGAGTATTTCTACATGCCCATAACTCAGGCTGCTAAAGAGCTTAATGTGGGACTCACTCTTTTGAAGAAGAGATGTAGAGAATTGGGAATAAGAAGATGGCCTCATAGGAAGTTGATGAGCCTACAAACCCTAATCAAGAATGTCAAGGAGATTCAAAAGGGAGAAGGAGAGGGAAATGGAGAGAATAAGTTGAAGAATGTATTGGAAATATTAGAGAATGAGAAGAAGTTAATGGAGGAAAGGCCAGATTTGCAATTAAAGGACAACACAAAGAGGCTTAGACAAGCTTGTTTCAAGGCCAACTACAAGAAAAGAAAGCTCTCAGGAATCATCTTCAATAATAACAATAATATAATTAATGAAGATAATTCCCAGTATTTCTCATCCTCCACCACCATTCATGATCAGGATGAAGAAGATGATGAAGAAATGAAATATCTCTTGTCAGATTGCTCATTTTCCTCAACTAACTGCACCCTGTTCATTCTGAAGAACATTCACCATACAACAAATCCGGCGGTTTTGAAGAACACCAACGACGGCCAAATTGGCGGTGGAGCCCCATAG 1038 37.96 MDATWRPKCEVMAFEDSFPLSCQLSPLPFRSSYNNYSGLDWNCNFGLQDNIFEVVPLLESFPNNDSFLESKDIVPINTFISEDGVGIWSEMENGIFGFVEEEPVLLLEGEDGGGNEENREVMKKGKRKYLRSENSKNNGSYSTSSSSSKMLSRKAISEYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVKEIQKGEGEGNGENKLKNVLEILENEKKLMEERPDLQLKDNTKRLRQACFKANYKKRKLSGIIFNNNNNIINEDNSQYFSSSTTIHDQDEEDDEEMKYLLSDCSFSSTNCTLFILKNIHHTTNPAVLKNTNDGQIGGGAP 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32600403 32604018 - CrPI670011_06g024870.1 Cre06g2487 501949

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2487 345 MobiDBLite consensus disorder prediction 109 147 - -
Cre06g2487 345 Coils Coil 218 238 - -
Cre06g2487 345 Pfam RWP-RK domain 151 198 IPR003035 -
Cre06g2487 345 ProSiteProfiles RWP-RK domain profile. 134 219 IPR003035 -
Cre06g2487 345 PANTHER PROTEIN RKD4 133 278 IPR044607 GO:0003700(InterPro)
Cre06g2487 345 MobiDBLite consensus disorder prediction 112 133 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2487 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1714 Cre-Chr4:35297006 Cre06g2487 Cre-Chr6:32600403 4.30E-15 dispersed
Cre05g1087 Cre-Chr5:10207638 Cre06g2487 Cre-Chr6:32600403 1.10E-28 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre06g2487 . 149 267 AtRKD Transcription Factor Family AT1G18790 71.4 2.1e-39 159.8
Cre06g2487 . 151 263 AtRKD Transcription Factor Family AT1G74480 72.6 5.3e-39 158.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002327 1 2 1 3 2 2 3 2 2 4 1 2 2 4 2 2 2 2 2 2 1 2 2 2 2 1 2 3 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53942 PF02042 RWP-RK 6.50E-21 No_clan Cre TF