Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2502 ATGGAGGCTGAAAAAGCTTTGCCAACCATAGATGATAAAGTTCAATCAAGTGGAGGAGGAGATGAAGAAGCTGCTCCCAATCCTAAACAAGATGTTCTTCTCAAGGATGACCAACATCATGAAGAAAGAATCAAAAGGACGAGAGTTGAAATGAGAGAAGTAAGGGAAGAAAACGAGAGGCTAAAAAAGAGTTTGGATGAAATAATGAAGGATTACGAGACATTGAAAAGGAAGTTCCATGAGATGAATCATCAAATTACACAAACAAATGGAAGTACCATAAATAATATTGATCATGAAGTTGAAGAAGAAGTTGATGACATGGTTTCACTCACATTAGGAAGATTCTCAACCCATCAAAATAAGAACACCACTTCTTCCTCCTCACTAACTAAATTAGATCATCAAAAAATCTTAGACCTCAAACAAGATTATATTATTCAAACCCCATCAATTATTGATCGCAATATTCAAAGTCCAACCCATAGTGAACCTAAAGAGGAAGAAGCCGGACAGACGTGGCCGCCAAGTAAAATGTCGAAGCCCAGCAGTTTGCCCCCGCCCCCCATCGGAGAAGATGAAGTTTCTCAACAAAATCCTCCAAAGAAAGCTAGGGTTTGTGTGAGAGCTCGGTGTGATACTCCAACGATGAACGATGGTTGTCAATGGAGAAAATATGGACAAAAGATTGCAAAAGGAAATCCTTGCCCTAGAGCTTATTATCGTTGCACTGGTGCACCCACATGTCCAGTAAGGAAGCAGGTGCAAAGGAGTGTTGATGATATTTCCATACTAATAACAACCTATGAAGGAACTCACAACCATCCTCTACCTGTTTCAGCCATGGCCATGGCTTCCACCACCTCGGCCGCCGCCTCGATGCTCCTCTCGGGCGCTTCCTCCTCCACCTCTCAACCCGGTCTTAACCCTTCATTCACCACCTCCGCCGCTGCAGCGAATCTTCATGGAATGAACATGTATCTCTCTAACAACACCAATTCAAAGCAATTCTACTTGTCAAACTCTTCAATGCTATCTTCTTCTCTCAACCATCCCACAATCACTTTAGACCTAACTTCAAATCCTCCCTCAACTTCCTCCTCCTCCTCTCCTTTCCATAAGAATATTCCTTCAATTAATAATAGTTATCCCCCAAAATACCCCTTCACAAGCCTTGATTTTGGCTCTTCACAACCCAACTTCATGTCTTGGAACAATAATAATAATAGTGGTTATCAAGCTTATAGTAATATAAGCAAAAATAATGCAATAATAGGAATGCCGTCAGACTTTGCTAAACAACTCCCTCTCCATACTAACATTTATCAAGCCTATCTTCAACAATTTTCCAAATCTTCAACTCCGCTGCCCCCGCCGCCTCTACCAGACACGATAGCGGCAGCAACTAAGGTAATTACGTCGGACCCGAGTTTCCAATCGGCATTGGCAGCTGCCTTGAGCACGATCATCGTTGGTGGCGGGAGTGGCGGCGAGAGGGGTCCTCCAACTTCCAGCTTAGTTGGAGGAGCACAGGCAGCTAAGTCATTAACATGCTCCACCTCAAAGAGTCCTTCTTCATCTCCTGGGGATAGTAGAGAAAATGGGAAGTGA 1611 43.2 MEAEKALPTIDDKVQSSGGGDEEAAPNPKQDVLLKDDQHHEERIKRTRVEMREVREENERLKKSLDEIMKDYETLKRKFHEMNHQITQTNGSTINNIDHEVEEEVDDMVSLTLGRFSTHQNKNTTSSSSLTKLDHQKILDLKQDYIIQTPSIIDRNIQSPTHSEPKEEEAGQTWPPSKMSKPSSLPPPPIGEDEVSQQNPPKKARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTGAPTCPVRKQVQRSVDDISILITTYEGTHNHPLPVSAMAMASTTSAAASMLLSGASSSTSQPGLNPSFTTSAAAANLHGMNMYLSNNTNSKQFYLSNSSMLSSSLNHPTITLDLTSNPPSTSSSSSPFHKNIPSINNSYPPKYPFTSLDFGSSQPNFMSWNNNNNSGYQAYSNISKNNAIIGMPSDFAKQLPLHTNIYQAYLQQFSKSSTPLPPPPLPDTIAAATKVITSDPSFQSALAAALSTIIVGGGSGGERGPPTSSLVGGAQAAKSLTCSTSKSPSSSPGDSRENGK 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32726927 32731751 - CrPI670011_06g025020.1 Cre06g2502 501964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2502 536 MobiDBLite consensus disorder prediction 493 536 - -
Cre06g2502 536 Pfam WRKY DNA -binding domain 218 276 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre06g2502 536 MobiDBLite consensus disorder prediction 1 41 - -
Cre06g2502 536 MobiDBLite consensus disorder prediction 356 377 - -
Cre06g2502 536 SMART WRKY_cls 217 277 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre06g2502 536 FunFam probable WRKY transcription factor 31 202 279 - -
Cre06g2502 536 SUPERFAMILY WRKY DNA-binding domain 210 278 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre06g2502 536 ProSiteProfiles WRKY domain profile. 212 278 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre06g2502 536 MobiDBLite consensus disorder prediction 152 204 - -
Cre06g2502 536 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 30 494 IPR044810 GO:0003700(InterPro)
Cre06g2502 536 Coils Coil 37 85 - -
Cre06g2502 536 MobiDBLite consensus disorder prediction 508 536 - -
Cre06g2502 536 Gene3D WRKY domain 202 279 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0538 Cre-Chr2:2506541 Cre06g2502 Cre-Chr6:32726927 4.70E-41 dispersed
Cre04g1796 Cre-Chr4:35873961 Cre06g2502 Cre-Chr6:32726927 1.10E-43 dispersed
Cre05g1801 Cre-Chr5:30008472 Cre06g2502 Cre-Chr6:32726927 2.30E-19 dispersed
Cre06g2502 Cre-Chr6:32726927 Cre10g1443 Cre-Chr10:28210514 4.30E-23 dispersed
Cre05g1165 Cre-Chr5:11221369 Cre06g2502 Cre-Chr6:32726927 5.80E-43 transposed
Cre01g1330 Cre-Chr1:26503503 Cre06g2502 Cre-Chr6:32726927 6.70E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53947 PF03106 WRKY 1.20E-23 CL0274 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2502 - - - 0.0