Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre06g2502 | ATGGAGGCTGAAAAAGCTTTGCCAACCATAGATGATAAAGTTCAATCAAGTGGAGGAGGAGATGAAGAAGCTGCTCCCAATCCTAAACAAGATGTTCTTCTCAAGGATGACCAACATCATGAAGAAAGAATCAAAAGGACGAGAGTTGAAATGAGAGAAGTAAGGGAAGAAAACGAGAGGCTAAAAAAGAGTTTGGATGAAATAATGAAGGATTACGAGACATTGAAAAGGAAGTTCCATGAGATGAATCATCAAATTACACAAACAAATGGAAGTACCATAAATAATATTGATCATGAAGTTGAAGAAGAAGTTGATGACATGGTTTCACTCACATTAGGAAGATTCTCAACCCATCAAAATAAGAACACCACTTCTTCCTCCTCACTAACTAAATTAGATCATCAAAAAATCTTAGACCTCAAACAAGATTATATTATTCAAACCCCATCAATTATTGATCGCAATATTCAAAGTCCAACCCATAGTGAACCTAAAGAGGAAGAAGCCGGACAGACGTGGCCGCCAAGTAAAATGTCGAAGCCCAGCAGTTTGCCCCCGCCCCCCATCGGAGAAGATGAAGTTTCTCAACAAAATCCTCCAAAGAAAGCTAGGGTTTGTGTGAGAGCTCGGTGTGATACTCCAACGATGAACGATGGTTGTCAATGGAGAAAATATGGACAAAAGATTGCAAAAGGAAATCCTTGCCCTAGAGCTTATTATCGTTGCACTGGTGCACCCACATGTCCAGTAAGGAAGCAGGTGCAAAGGAGTGTTGATGATATTTCCATACTAATAACAACCTATGAAGGAACTCACAACCATCCTCTACCTGTTTCAGCCATGGCCATGGCTTCCACCACCTCGGCCGCCGCCTCGATGCTCCTCTCGGGCGCTTCCTCCTCCACCTCTCAACCCGGTCTTAACCCTTCATTCACCACCTCCGCCGCTGCAGCGAATCTTCATGGAATGAACATGTATCTCTCTAACAACACCAATTCAAAGCAATTCTACTTGTCAAACTCTTCAATGCTATCTTCTTCTCTCAACCATCCCACAATCACTTTAGACCTAACTTCAAATCCTCCCTCAACTTCCTCCTCCTCCTCTCCTTTCCATAAGAATATTCCTTCAATTAATAATAGTTATCCCCCAAAATACCCCTTCACAAGCCTTGATTTTGGCTCTTCACAACCCAACTTCATGTCTTGGAACAATAATAATAATAGTGGTTATCAAGCTTATAGTAATATAAGCAAAAATAATGCAATAATAGGAATGCCGTCAGACTTTGCTAAACAACTCCCTCTCCATACTAACATTTATCAAGCCTATCTTCAACAATTTTCCAAATCTTCAACTCCGCTGCCCCCGCCGCCTCTACCAGACACGATAGCGGCAGCAACTAAGGTAATTACGTCGGACCCGAGTTTCCAATCGGCATTGGCAGCTGCCTTGAGCACGATCATCGTTGGTGGCGGGAGTGGCGGCGAGAGGGGTCCTCCAACTTCCAGCTTAGTTGGAGGAGCACAGGCAGCTAAGTCATTAACATGCTCCACCTCAAAGAGTCCTTCTTCATCTCCTGGGGATAGTAGAGAAAATGGGAAGTGA | 1611 | 43.2 | MEAEKALPTIDDKVQSSGGGDEEAAPNPKQDVLLKDDQHHEERIKRTRVEMREVREENERLKKSLDEIMKDYETLKRKFHEMNHQITQTNGSTINNIDHEVEEEVDDMVSLTLGRFSTHQNKNTTSSSSLTKLDHQKILDLKQDYIIQTPSIIDRNIQSPTHSEPKEEEAGQTWPPSKMSKPSSLPPPPIGEDEVSQQNPPKKARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTGAPTCPVRKQVQRSVDDISILITTYEGTHNHPLPVSAMAMASTTSAAASMLLSGASSSTSQPGLNPSFTTSAAAANLHGMNMYLSNNTNSKQFYLSNSSMLSSSLNHPTITLDLTSNPPSTSSSSSPFHKNIPSINNSYPPKYPFTSLDFGSSQPNFMSWNNNNNSGYQAYSNISKNNAIIGMPSDFAKQLPLHTNIYQAYLQQFSKSSTPLPPPPLPDTIAAATKVITSDPSFQSALAAALSTIIVGGGSGGERGPPTSSLVGGAQAAKSLTCSTSKSPSSSPGDSRENGK | 536 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 32726927 | 32731751 | - | CrPI670011_06g025020.1 | Cre06g2502 | 501964 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre06g2502 | 536 | MobiDBLite | consensus disorder prediction | 493 | 536 | - | - | |
Cre06g2502 | 536 | Pfam | WRKY DNA -binding domain | 218 | 276 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre06g2502 | 536 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Cre06g2502 | 536 | MobiDBLite | consensus disorder prediction | 356 | 377 | - | - | |
Cre06g2502 | 536 | SMART | WRKY_cls | 217 | 277 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre06g2502 | 536 | FunFam | probable WRKY transcription factor 31 | 202 | 279 | - | - | |
Cre06g2502 | 536 | SUPERFAMILY | WRKY DNA-binding domain | 210 | 278 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre06g2502 | 536 | ProSiteProfiles | WRKY domain profile. | 212 | 278 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre06g2502 | 536 | MobiDBLite | consensus disorder prediction | 152 | 204 | - | - | |
Cre06g2502 | 536 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 30 | 494 | IPR044810 | GO:0003700(InterPro) | |
Cre06g2502 | 536 | Coils | Coil | 37 | 85 | - | - | |
Cre06g2502 | 536 | MobiDBLite | consensus disorder prediction | 508 | 536 | - | - | |
Cre06g2502 | 536 | Gene3D | WRKY domain | 202 | 279 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g0538 | Cre-Chr2:2506541 | Cre06g2502 | Cre-Chr6:32726927 | 4.70E-41 | dispersed | |
Cre04g1796 | Cre-Chr4:35873961 | Cre06g2502 | Cre-Chr6:32726927 | 1.10E-43 | dispersed | |
Cre05g1801 | Cre-Chr5:30008472 | Cre06g2502 | Cre-Chr6:32726927 | 2.30E-19 | dispersed | |
Cre06g2502 | Cre-Chr6:32726927 | Cre10g1443 | Cre-Chr10:28210514 | 4.30E-23 | dispersed | |
Cre05g1165 | Cre-Chr5:11221369 | Cre06g2502 | Cre-Chr6:32726927 | 5.80E-43 | transposed | |
Cre01g1330 | Cre-Chr1:26503503 | Cre06g2502 | Cre-Chr6:32726927 | 6.70E-78 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53947 | PF03106 | WRKY | 1.20E-23 | CL0274 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre06g2502 | - | - | - | 0.0 |