Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2506 ATGGGTCCTTTCATTTGGGTCTTCTCCTTCATTTTAGCAGCTACGCTTTTGAGCCACTGCTGTTTTTCTCTCACTGAAGATGGTCTAACATTGTTGGAGATCAAAAGTACTTTAAATGACACTAAGGACGTCCTCAGTAATTGGAACCCTTCAGATGAATCTCCCTGCAAATGGACTGGTATCTCTTGCCATCCCGAGGACTCTCGTGTCAGCTCAATTAATCTACCATTCATGCAACTAGGAGGGATTATATCTCCCAGCATTGGTAAACTTAGTAGATTGCAGAGACTGGCTCTCCACCAGAACGGCTTACATGGATATATTCCCAATGAACTTGCCAATTGTTCTGAACTTAGAGCCCTGTACTTGAGGGCTAATTATCTTCAAGGTGGCATTCCATCAAATGTTGGAAACCTTTCATATCTTACCATACTTGATTTATCAAGCAATTCCCTTAAGGGTAGTATACCATCATCAATTGGTCGTCTCACACACTTGCGCAATCTGAATTTATCTACTAACTTTTTCTTTGGAGAAATCCCAGATATTGGAGTTCTAAGCACCTTTGGTAACAACTCGTTCTTTGGCAATCAAGGTCTCTGTGGCCGACAAGTGAACAAGCCGTGCCGGACCTCACTGGGGTTTCCTGTCATTTTACCACATGCTGCAATTCCTGCCAAACGGTCCTCTCATTACATGAAAGGACTGTTGATTGGTGCAATATCGATAGCAGGGTTTGTATTGGTCATATTTATTGTATTCATGTGGACTCGTTTGGTGTCGAAGAAAGAAAGAACTGCAAAGAGTTACATGGAAGTTAAGAAGCAAAAAAATCGTGAAACAAGTGCGAAGCTTATTACATTTCATGGTGATCTACCGTATCCAACACGTGAGATCATAGAAAAGCTGGAAGCCCTGAATGAAACAAATGTTGTTGGCTCAGGAGGTTTTGGCACTGTGTATCGGATGGTCATGAATGATTCTGGAGCTTTTGCTGTGAAGAAAATTGATAGGACTCAAGACGGTCCAGACCAAGTTGTTGAAAGAGAATTGGAGATATTGGGTAGCATTAAGCACATAAATTTAGTGAAATTGCGTGGTTATTGCCGGCTTCCTTCTTCAAAGCTTCTCATATATGACTATCTGGCGGCGGGTAGCTTGGATGATTTCTTGCACGAATATGGACCACAAAAGTCTTTGGATTGGAGTGCTCGGTTAAACATAGCACTAGGCTCTGCTCGAGGATTGGCGTACTTGCACCATGATTGCTGTCCAAAGATTGTTCACTGCAACATAAAATCCAGCAACATTCTTCTTGATGGAAACTTAGAGCCGCACGTATCTGACTTTGGTCTTGCAAAGCTTTCGGTTAATGGGGATTCCCATGTCACAACTGTTGTTGCTGGCACATTTGGTTATCTGGCTCCAGAATACTTGGAAAGTGGGATAGGAACTGAGAAGTCTGATGTTTATAGCTTTGGAGTTCTCTTGCTGGAGCTTGTAACAGGGAAGAGACCGAGTGATCCATTTTTCTCAAAGCGGGGCGTAAATATTGTTGGTTGGTTGAACACACTGCGGGGAGAAGACCAATTGGAGAACATAGTTGATAATAGGTGCCGGAATGCAGATGTCGAAACTGTAGAAGCGATTCTCGAAATAGCGGCGAGGTGCACCGATGGCAACCCGACTATGCGACCTACAATGAACCAAGTACTGCAGCAGCTAGAGCAAGAGGTGATGTCGCCTTACCCGAGCGATTACACCGAGTCTCACTCGGATTATTCGTGA 1788 43.51 MGPFIWVFSFILAATLLSHCCFSLTEDGLTLLEIKSTLNDTKDVLSNWNPSDESPCKWTGISCHPEDSRVSSINLPFMQLGGIISPSIGKLSRLQRLALHQNGLHGYIPNELANCSELRALYLRANYLQGGIPSNVGNLSYLTILDLSSNSLKGSIPSSIGRLTHLRNLNLSTNFFFGEIPDIGVLSTFGNNSFFGNQGLCGRQVNKPCRTSLGFPVILPHAAIPAKRSSHYMKGLLIGAISIAGFVLVIFIVFMWTRLVSKKERTAKSYMEVKKQKNRETSAKLITFHGDLPYPTREIIEKLEALNETNVVGSGGFGTVYRMVMNDSGAFAVKKIDRTQDGPDQVVERELEILGSIKHINLVKLRGYCRLPSSKLLIYDYLAAGSLDDFLHEYGPQKSLDWSARLNIALGSARGLAYLHHDCCPKIVHCNIKSSNILLDGNLEPHVSDFGLAKLSVNGDSHVTTVVAGTFGYLAPEYLESGIGTEKSDVYSFGVLLLELVTGKRPSDPFFSKRGVNIVGWLNTLRGEDQLENIVDNRCRNADVETVEAILEIAARCTDGNPTMRPTMNQVLQQLEQEVMSPYPSDYTESHSDYS 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32765174 32768722 - CrPI670011_06g025060.1 Cre06g2506 501968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2506 595 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Cre06g2506 595 SUPERFAMILY L domain-like 22 186 - -
Cre06g2506 595 Gene3D Ribonuclease Inhibitor 25 211 IPR032675 -
Cre06g2506 595 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 15 86 IPR050647 -
Cre06g2506 595 ProSitePatterns Protein kinases ATP-binding region signature. 312 335 IPR017441 GO:0005524(InterPro)
Cre06g2506 595 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 382 586 - -
Cre06g2506 595 Gene3D Transferase(Phosphotransferase) domain 1 382 586 - -
Cre06g2506 595 SUPERFAMILY Protein kinase-like (PK-like) 285 576 IPR011009 -
Cre06g2506 595 ProSiteProfiles Protein kinase domain profile. 306 580 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g2506 595 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 24 186 - -
Cre06g2506 595 Pfam Protein kinase domain 308 574 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g2506 595 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Cre06g2506 595 Gene3D Phosphorylase Kinase; domain 1 265 381 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2506 Cre-Chr6:32765174 Cre07g1493 Cre-Chr7:30152885 3.40E-122 dispersed
Cre01g1322 Cre-Chr1:26428844 Cre06g2506 Cre-Chr6:32765174 3.40E-206 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64241 PF00069 Pkinase 2.40E-44 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2506 - - - 0.0