Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2524 ATGGATCCTCCACTTGTTAATGAATCCTCCTTCTCCGCTGCGAATCCTTCTGCTTACAGCTTGGCCTCGATTTGGCCTTTTGGGGGAGAGCAGGGCGGGAGCGCATTGGGGCTTCGAATGGCTAATTTGGTTCAGATTCTTGGTGGATTTCCTGAGAGCTCCACGAATCGCGACGGATCAATGGAAGAATCGACAGTGACGGAGCAGAGTGGCGGTGGGAGGAAGAGGAAGGATGTGAGCTCCGAGGATGAATCTTCGAGAATGGTTTCAACTAGTAGTGCTAATCAATTGAGTAACTCAAATGGTAAACGGATGAAAGTAGTGGAATCCAGAGATGAAAATGGTGGTATAAAAGCTGAAGTAGAACCTAGCTCAACAGATGGCAAGAAGCTGGCTGAGCAAAGCCAGAAACCTGAACCACCAAAGGATTACATCCATGTCAGAGCAAGAAGGGGCCAAGCTACTGATAGCCATAGTTTAGCAGAAAGAGCAAGAAGAGAGAAGATTAGTGAGAGAATGAAAATTTTGCAGGACTTGGTTCCAGGTTGTAACAAGGTTATTGGAAAAGCACTTGTCCTTGATGAGATAATAAATTATATCCAATCACTGCAACGTCAGGTCGAGTTCCTCTCCATGAAGCTTGAAGCTGTGAATTCCAGGATGAACATAAACCCTGGCATAGAAGGTTTTACTGTAAAAAATATCGTTAATCAATCATATGATGCAGCTGGAATATTATATGGTTCACAAGCAAGAGATTATAACCAAGGTGGACAACCTGAATGGTTGCATATGCAGATTGGTGGAATTGTACTGGAGAAAAGAGTACTGAGCTTCCCTTACGGCTCTAATTTGCTTGCTCCCTGA 867 44.29 MDPPLVNESSFSAANPSAYSLASIWPFGGEQGGSALGLRMANLVQILGGFPESSTNRDGSMEESTVTEQSGGGRKRKDVSSEDESSRMVSTSSANQLSNSNGKRMKVVESRDENGGIKAEVEPSSTDGKKLAEQSQKPEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNINPGIEGFTVKNIVNQSYDAAGILYGSQARDYNQGGQPEWLHMQIGGIVLEKRVLSFPYGSNLLAP 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32895877 32899228 + CrPI670011_06g025240.1 Cre06g2524 501986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2524 288 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 62 231 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cre06g2524 288 MobiDBLite consensus disorder prediction 69 84 - -
Cre06g2524 288 MobiDBLite consensus disorder prediction 105 144 - -
Cre06g2524 288 CDD bHLH_AtBPE_like 143 225 - -
Cre06g2524 288 Pfam Helix-loop-helix DNA-binding domain 157 204 IPR011598 GO:0046983(InterPro)
Cre06g2524 288 Gene3D - 150 224 IPR036638 GO:0046983(InterPro)
Cre06g2524 288 MobiDBLite consensus disorder prediction 49 144 - -
Cre06g2524 288 MobiDBLite consensus disorder prediction 49 68 - -
Cre06g2524 288 MobiDBLite consensus disorder prediction 85 104 - -
Cre06g2524 288 SMART finulus 159 209 IPR011598 GO:0046983(InterPro)
Cre06g2524 288 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 203 IPR011598 GO:0046983(InterPro)
Cre06g2524 288 Coils Coil 200 220 - -
Cre06g2524 288 FunFam Basic helix-loop-helix transcription factor 150 222 - -
Cre06g2524 288 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 223 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2524 Cre-Chr6:32895877 Cre08g0849 Cre-Chr8:21595971 3.20E-65 dispersed
Cre06g2524 Cre-Chr6:32895877 Cre02g0851 Cre-Chr2:5344030 1.10E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53950 PF00010 HLH 2.40E-08 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2524 - - - 0.0