Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2529 ATGGTGTCTGCATCGACTCGTCAGAAGAACATGCACTCCCTTCTGGTAGCCAATCTCACGAAGCTTACGATTCCTTCGTCGTCTTCTTCTTCTTCTTCTTCTCCTCCTCCTTCATCCGCCGCCGCCGCCGTTCATGACTTTGATTTCTCCGATGTATTTGGCCCCACAAATCCCTCTCCGTCATCTTTTCCCGGGGACCCACAACACCATGAACAACAACCAGTGGTAATTCATAACAGATCTCACTCATTTGTGGGTCCTTCTCCCCGTTTAACCCCCCCAGCTTCCCTTCCTTTTTTCCGAGAAGTCGATTCACAGAGCGAAGGGGAGGAAGAAGAAGAAGATGGCCTAGAAATCTCGACTCGCAATGGAACTCAAGAGGAGAAGAAAAGGGTGGGTGAAACTGAAAATATTGGTGGAGAAAATGTACAGGGGAAGATTGGAGTTGGGGATTTTGATATTCTTCGAGTTGTGGGAAAAGGGGCGTTTGGGAAAGTCTTTTTGGTGAGGAAGAAAGGGAATTGTAAAGGAAACGGTTCTAACAATGATGGGATTTATGCTATGAAAGTGATGAGGAAAGATACCATCATAAAGAAGAATCATGTGGACTATATGAAGGCTGAGAGAGATATTCTCACAAAAGTTGCTCATCCTTTCATTGTTCAGCTACGCTACTCTTTCCAGACCAAATCAAAACTTTATTTGATTCTTGATTTCATAAATGGGGGGCATCTCTTTTACCATCTGTACAGGCAGGGGATCTTCAGTGAGGATCAGGCAAGGGTCTATGCAGCTGAGATCGTTTCAGCTGTTTCGCATCTTCACAACTGCGGTATTGTGCACCGTGATCTCAAGCCTGAGAACATCCTTATGGATGCTGATGGACATGTAGTGCTTACAGATTTTGGACTGGCCAAGGAAATTGATGAGTCAAGCCGGTCGAATTCGTTGTGTGGAACAACAGAATACATGGCTCCAGAAATCTTGCTTTCTAAAGGCCACAACAAAGATGCTGACTGGTGGAGTGTTGGAGTCCTCTTGTATGAAATGCTTAGTGGCCAGCCACCATTCACACATGCCAATAGAAAGAAGCTTCAAGAAAGAATAATCAAAGAGAAAGTGAAGCTTCCCCCATACCTGAGCACTGAAGCTCACTCTTTACTCAGAGGGCTGCTACAAAAGGAGCCTTCTAAAAGATTAGGTAGCGGACCCAACGGAGGGGACGAGATAAAAAACCATAAATGGTTTCGACCTGTGAACTGGAAGAAATTGGAATGTAGGGAGCTGCAACCAAAATTCAAGCCGGATGTTAATGGAAAAGACTGCACAGCAAATTTCGATCATTGTTGGACAGCAATGCCCCCAGACGACTCACCAGCTCCGACACCAACAGACGGTGGACACTTCCAGGGATATAGTTATGTTGCTCCTAACCCTTGGCTTTCATCATCTGGATAG 1458 45.47 MVSASTRQKNMHSLLVANLTKLTIPSSSSSSSSSPPPSSAAAAVHDFDFSDVFGPTNPSPSSFPGDPQHHEQQPVVIHNRSHSFVGPSPRLTPPASLPFFREVDSQSEGEEEEEDGLEISTRNGTQEEKKRVGETENIGGENVQGKIGVGDFDILRVVGKGAFGKVFLVRKKGNCKGNGSNNDGIYAMKVMRKDTIIKKNHVDYMKAERDILTKVAHPFIVQLRYSFQTKSKLYLILDFINGGHLFYHLYRQGIFSEDQARVYAAEIVSAVSHLHNCGIVHRDLKPENILMDADGHVVLTDFGLAKEIDESSRSNSLCGTTEYMAPEILLSKGHNKDADWWSVGVLLYEMLSGQPPFTHANRKKLQERIIKEKVKLPPYLSTEAHSLLRGLLQKEPSKRLGSGPNGGDEIKNHKWFRPVNWKKLECRELQPKFKPDVNGKDCTANFDHCWTAMPPDDSPAPTPTDGGHFQGYSYVAPNPWLSSSG 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32935047 32937228 + CrPI670011_06g025290.1 Cre06g2529 501991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2529 485 MobiDBLite consensus disorder prediction 24 39 - -
Cre06g2529 485 MobiDBLite consensus disorder prediction 54 68 - -
Cre06g2529 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 279 291 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g2529 485 FunFam Non-specific serine/threonine protein kinase 149 263 - -
Cre06g2529 485 MobiDBLite consensus disorder prediction 103 132 - -
Cre06g2529 485 Gene3D Transferase(Phosphotransferase) domain 1 240 435 - -
Cre06g2529 485 CDD STKc_AGC 158 416 IPR045270 GO:0004674(InterPro)|GO:0005524(InterPro)
Cre06g2529 485 PANTHER RIBOSOMAL PROTEIN S6 KINASE 114 478 - -
Cre06g2529 485 SMART serkin_6 152 416 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g2529 485 SUPERFAMILY Protein kinase-like (PK-like) 149 479 IPR011009 -
Cre06g2529 485 Pfam Protein kinase C terminal domain 437 474 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g2529 485 ProSiteProfiles AGC-kinase C-terminal domain profile. 417 484 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g2529 485 Pfam Protein kinase domain 154 416 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g2529 485 ProSitePatterns Protein kinases ATP-binding region signature. 158 189 IPR017441 GO:0005524(InterPro)
Cre06g2529 485 ProSiteProfiles Protein kinase domain profile. 152 416 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g2529 485 SMART pkinase_C_6 417 476 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g2529 485 FunFam Non-specific serine/threonine protein kinase 240 435 - -
Cre06g2529 485 MobiDBLite consensus disorder prediction 118 132 - -
Cre06g2529 485 Gene3D Phosphorylase Kinase; domain 1 151 458 - -
Cre06g2529 485 MobiDBLite consensus disorder prediction 24 72 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2327 Cre-Chr5:34849497 Cre06g2529 Cre-Chr6:32935047 2.70E-54 dispersed
Cre06g1708 Cre-Chr6:14433638 Cre06g2529 Cre-Chr6:32935047 8.30E-21 dispersed
Cre06g2529 Cre-Chr6:32935047 Cre09g2005 Cre-Chr9:39116551 2.70E-61 dispersed
Cre06g2529 Cre-Chr6:32935047 Cre02g0647 Cre-Chr2:3412628 1.80E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64242 PF00069 Pkinase 7.10E-72 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2529 K04688 - csv:101214867 885.945