Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre06g2534 | ATGGCGACGGTTCCTGACCGCTTCCGTCGCAACCCCATCGACAGACTTGTTGGGATTTCCGACGATTCGAAACAGAGTTGTAGTTCGAAGACCCAGCTTCATGTTCTTGCTGTTGATGATAGCCTCGTCGATCGGAAGGTTATTGAGCGATTGTTGAAGATCTCGTCGTGTAAAGTTACTGCTGTTGAGAGCGGGAGAAGTGCTCTTCAGTATCTGGGTTTGGATGGGGAAAACAATTCTGTTCAGTTTAGTAGTGGTTTGAAGGTGAATCTCATCATTACAGATTACTCCATGCCTGAAATGACAGGATATGAATTGCTCAAGAAGATCAAGGAATCATCAGCTTTCAGGGAGATTCCTGTTGTGATAATGTCATCAGAGAATATTTTGGCTCGAATAGACAGTTGCTTGAAGGAAGGGGCTGAAGAATTCATAGTGAAGCCTGTGAAATTGTCTGATGTGAAACGATTGAAAGATTTCATTATGGAAGGAGAAAATGAAGGAAAGAAAATTGGGTTAAAGAGGAAGCTACATCTTGATCATGATCACGATCACCACCCGTCGTCTCCAGTTTCTCCGGCGTCATCCGCGGCAGTGTTCGACCCTTGCCACGGATTTCTGCAACGATCAGCACCGTCATTTCGACGTTCATCAAAGAAACCTAGGTTCCTCAATGGCAACTAA | 684 | 44.74 | MATVPDRFRRNPIDRLVGISDDSKQSCSSKTQLHVLAVDDSLVDRKVIERLLKISSCKVTAVESGRSALQYLGLDGENNSVQFSSGLKVNLIITDYSMPEMTGYELLKKIKESSAFREIPVVIMSSENILARIDSCLKEGAEEFIVKPVKLSDVKRLKDFIMEGENEGKKIGLKRKLHLDHDHDHHPSSPVSPASSAAVFDPCHGFLQRSAPSFRRSSKKPRFLNGN | 227 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 32991425 | 32992583 | - | CrPI670011_06g025340.1 | Cre06g2534 | 501996 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre06g2534 | 227 | CDD | REC_typeA_ARR | 35 | 157 | - | - | |
| Cre06g2534 | 227 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 30 | 188 | IPR045279 | GO:0009736(InterPro) | |
| Cre06g2534 | 227 | Pfam | Response regulator receiver domain | 35 | 154 | IPR001789 | GO:0000160(InterPro) | |
| Cre06g2534 | 227 | Gene3D | - | 32 | 197 | - | - | |
| Cre06g2534 | 227 | SUPERFAMILY | CheY-like | 32 | 157 | IPR011006 | - | |
| Cre06g2534 | 227 | ProSiteProfiles | Response regulatory domain profile. | 34 | 162 | IPR001789 | GO:0000160(InterPro) | |
| Cre06g2534 | 227 | SMART | REC_2 | 33 | 158 | IPR001789 | GO:0000160(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre06g2534 | Cre-Chr6:32991425 | Cre10g1736 | Cre-Chr10:31659739 | 9.00E-39 | dispersed | |
| Cre04g0540 | Cre-Chr4:21041581 | Cre06g2534 | Cre-Chr6:32991425 | 1.30E-41 | transposed | |
| Cre05g2843 | Cre-Chr5:39080935 | Cre06g2534 | Cre-Chr6:32991425 | 1.20E-41 | transposed | |
| Cre07g0902 | Cre-Chr7:8148361 | Cre06g2534 | Cre-Chr6:32991425 | 2.10E-39 | transposed | |
| Cre08g0534 | Cre-Chr8:17995045 | Cre06g2534 | Cre-Chr6:32991425 | 4.60E-35 | transposed | |
| Cre05g2664 | Cre-Chr5:37620159 | Cre06g2534 | Cre-Chr6:32991425 | 7.50E-49 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 53952 | PF00072 | Response_reg | 9.80E-21 | CL0304 | Cre | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre06g2534 | K14492 | - | csv:101214143 | 326.25 |