Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2534 ATGGCGACGGTTCCTGACCGCTTCCGTCGCAACCCCATCGACAGACTTGTTGGGATTTCCGACGATTCGAAACAGAGTTGTAGTTCGAAGACCCAGCTTCATGTTCTTGCTGTTGATGATAGCCTCGTCGATCGGAAGGTTATTGAGCGATTGTTGAAGATCTCGTCGTGTAAAGTTACTGCTGTTGAGAGCGGGAGAAGTGCTCTTCAGTATCTGGGTTTGGATGGGGAAAACAATTCTGTTCAGTTTAGTAGTGGTTTGAAGGTGAATCTCATCATTACAGATTACTCCATGCCTGAAATGACAGGATATGAATTGCTCAAGAAGATCAAGGAATCATCAGCTTTCAGGGAGATTCCTGTTGTGATAATGTCATCAGAGAATATTTTGGCTCGAATAGACAGTTGCTTGAAGGAAGGGGCTGAAGAATTCATAGTGAAGCCTGTGAAATTGTCTGATGTGAAACGATTGAAAGATTTCATTATGGAAGGAGAAAATGAAGGAAAGAAAATTGGGTTAAAGAGGAAGCTACATCTTGATCATGATCACGATCACCACCCGTCGTCTCCAGTTTCTCCGGCGTCATCCGCGGCAGTGTTCGACCCTTGCCACGGATTTCTGCAACGATCAGCACCGTCATTTCGACGTTCATCAAAGAAACCTAGGTTCCTCAATGGCAACTAA 684 44.74 MATVPDRFRRNPIDRLVGISDDSKQSCSSKTQLHVLAVDDSLVDRKVIERLLKISSCKVTAVESGRSALQYLGLDGENNSVQFSSGLKVNLIITDYSMPEMTGYELLKKIKESSAFREIPVVIMSSENILARIDSCLKEGAEEFIVKPVKLSDVKRLKDFIMEGENEGKKIGLKRKLHLDHDHDHHPSSPVSPASSAAVFDPCHGFLQRSAPSFRRSSKKPRFLNGN 227
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 32991425 32992583 - CrPI670011_06g025340.1 Cre06g2534 501996
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2534 227 CDD REC_typeA_ARR 35 157 - -
Cre06g2534 227 PANTHER TWO-COMPONENT RESPONSE REGULATOR 30 188 IPR045279 GO:0009736(InterPro)
Cre06g2534 227 Pfam Response regulator receiver domain 35 154 IPR001789 GO:0000160(InterPro)
Cre06g2534 227 Gene3D - 32 197 - -
Cre06g2534 227 SUPERFAMILY CheY-like 32 157 IPR011006 -
Cre06g2534 227 ProSiteProfiles Response regulatory domain profile. 34 162 IPR001789 GO:0000160(InterPro)
Cre06g2534 227 SMART REC_2 33 158 IPR001789 GO:0000160(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2534 Cre-Chr6:32991425 Cre10g1736 Cre-Chr10:31659739 9.00E-39 dispersed
Cre04g0540 Cre-Chr4:21041581 Cre06g2534 Cre-Chr6:32991425 1.30E-41 transposed
Cre05g2843 Cre-Chr5:39080935 Cre06g2534 Cre-Chr6:32991425 1.20E-41 transposed
Cre07g0902 Cre-Chr7:8148361 Cre06g2534 Cre-Chr6:32991425 2.10E-39 transposed
Cre08g0534 Cre-Chr8:17995045 Cre06g2534 Cre-Chr6:32991425 4.60E-35 transposed
Cre05g2664 Cre-Chr5:37620159 Cre06g2534 Cre-Chr6:32991425 7.50E-49 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53952 PF00072 Response_reg 9.80E-21 CL0304 Cre TR
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2534 K14492 - csv:101214143 326.25