Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2534 ATGGCGACGGTTCCTGACCGCTTCCGTCGCAACCCCATCGACAGACTTGTTGGGATTTCCGACGATTCGAAACAGAGTTGTAGTTCGAAGACCCAGCTTCATGTTCTTGCTGTTGATGATAGCCTCGTCGATCGGAAGGTTATTGAGCGATTGTTGAAGATCTCGTCGTGTAAAGTTACTGCTGTTGAGAGCGGGAGAAGTGCTCTTCAGTATCTGGGTTTGGATGGGGAAAACAATTCTGTTCAGTTTAGTAGTGGTTTGAAGGTGAATCTCATCATTACAGATTACTCCATGCCTGAAATGACAGGATATGAATTGCTCAAGAAGATCAAGGAATCATCAGCTTTCAGGGAGATTCCTGTTGTGATAATGTCATCAGAGAATATTTTGGCTCGAATAGACAGTTGCTTGAAGGAAGGGGCTGAAGAATTCATAGTGAAGCCTGTGAAATTGTCTGATGTGAAACGATTGAAAGATTTCATTATGGAAGGAGAAAATGAAGGAAAGAAAATTGGGTTAAAGAGGAAGCTACATCTTGATCATGATCACGATCACCACCCGTCGTCTCCAGTTTCTCCGGCGTCATCCGCGGCAGTGTTCGACCCTTGCCACGGATTTCTGCAACGATCAGCACCGTCATTTCGACGTTCATCAAAGAAACCTAGGTTCCTCAATGGCAACTAA 684 44.74 MATVPDRFRRNPIDRLVGISDDSKQSCSSKTQLHVLAVDDSLVDRKVIERLLKISSCKVTAVESGRSALQYLGLDGENNSVQFSSGLKVNLIITDYSMPEMTGYELLKKIKESSAFREIPVVIMSSENILARIDSCLKEGAEEFIVKPVKLSDVKRLKDFIMEGENEGKKIGLKRKLHLDHDHDHHPSSPVSPASSAAVFDPCHGFLQRSAPSFRRSSKKPRFLNGN 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32991425 32992583 - CrPI670011_06g025340.1 Cre06g2534 501996

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2534 227 CDD REC_typeA_ARR 35 157 - -
Cre06g2534 227 PANTHER TWO-COMPONENT RESPONSE REGULATOR 30 188 IPR045279 GO:0009736(InterPro)
Cre06g2534 227 Pfam Response regulator receiver domain 35 154 IPR001789 GO:0000160(InterPro)
Cre06g2534 227 Gene3D - 32 197 - -
Cre06g2534 227 SUPERFAMILY CheY-like 32 157 IPR011006 -
Cre06g2534 227 ProSiteProfiles Response regulatory domain profile. 34 162 IPR001789 GO:0000160(InterPro)
Cre06g2534 227 SMART REC_2 33 158 IPR001789 GO:0000160(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2534 K14492 - - csv:101214143 326.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2534 Cre-Chr6:32991425 Cre10g1736 Cre-Chr10:31659739 9.00E-39 dispersed
Cre04g0540 Cre-Chr4:21041581 Cre06g2534 Cre-Chr6:32991425 1.30E-41 transposed
Cre05g2843 Cre-Chr5:39080935 Cre06g2534 Cre-Chr6:32991425 1.20E-41 transposed
Cre07g0902 Cre-Chr7:8148361 Cre06g2534 Cre-Chr6:32991425 2.10E-39 transposed
Cre08g0534 Cre-Chr8:17995045 Cre06g2534 Cre-Chr6:32991425 4.60E-35 transposed
Cre05g2664 Cre-Chr5:37620159 Cre06g2534 Cre-Chr6:32991425 7.50E-49 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g678 Blo04g00749 Blo16g00206 . . . Bpe13g00265 Bma06g00194 . . . Cma10g00154 . Car10g00145 . Sed08g0172 . . Bhi02g00384 Tan09g2194 Cmetu02g1807 . Hepe09g0164 . . Cla06g01631 Cam06g1813 Cec06g1863 Cco06g1869 Clacu06g1772 Cmu06g1714 Cre06g2534 . . Cone13ag0113 Cone19ag0116 . . . . . . . Bda14g00828 . Bpe15g00623 Bma03g00802 . . Cmo10g00165 . . . . . . Cpe18g00823 . . . . . . . . . . . . . . Lsi06g01513 Csa01g00186 Chy02g02547 Cme02g01933
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g1683 . 256 460 Response Regulator Gene Family AT3G16857 53.8 2.4e-54 210.7
Cre11g0834 . 416 743 Response Regulator Gene Family AT4G31920 51.2 8.8e-80 295.0
Cre06g1238 . 29 284 Response Regulator Gene Family AT4G31920 55.5 1.1e-71 268.1
Cre05g0777 . 16 271 Response Regulator Gene Family AT4G31920 54.1 1.1e-69 261.5
Cre08g1683 . 215 463 Response Regulator Gene Family AT4G31920 50.4 4.8e-62 236.1
Cre05g0777 . 99 286 Response Regulator Gene Family AT1G67710 50.3 1.9e-40 164.1
Cre05g1811 . 93 255 Response Regulator Gene Family AT1G67710 53.8 3.2e-40 163.3
Cre06g2086 . 99 269 Response Regulator Gene Family AT1G67710 50.8 2.0e-37 154.1
Cre06g2086 . 16 390 Response Regulator Gene Family AT2G25180 56.2 3.6e-103 372.9
Cre05g0777 . 18 291 Response Regulator Gene Family AT2G25180 55.9 1.5e-77 287.7
Cre08g1683 . 215 460 Response Regulator Gene Family AT2G25180 55.6 9.8e-69 258.5
Cre06g1238 . 92 325 Response Regulator Gene Family AT2G01760 51.4 8.1e-54 208.0
Cre06g2086 . 79 303 Response Regulator Gene Family AT2G01760 52.4 1.6e-49 193.7
Cre08g1683 . 276 463 Response Regulator Gene Family AT2G01760 51.0 3.9e-48 189.1
Cre08g1683 . 213 462 Response Regulator Gene Family AT5G58080 50.6 7.3e-62 235.7
Cre06g1238 . 30 255 Response Regulator Gene Family AT4G16110 66.7 2.3e-79 293.9
Cre05g0777 . 18 242 Response Regulator Gene Family AT4G16110 67.0 8.9e-79 292.0
Cre05g1811 . 12 233 Response Regulator Gene Family AT4G16110 60.2 2.2e-61 234.2
Cre08g1683 . 214 439 Response Regulator Gene Family AT4G16110 54.5 1.0e-58 225.3
Cre06g2086 . 17 249 Response Regulator Gene Family AT4G16110 53.0 9.6e-57 218.8
Cre11g0834 . 421 669 Response Regulator Gene Family AT4G16110 51.7 1.9e-52 204.5
Cre06g2534 . 16 177 Response Regulator Gene Family AT3G48100 69.3 1.4e-53 206.5
Cre05g2664 . 29 162 Response Regulator Gene Family AT3G48100 71.6 3.2e-50 195.3
Cre09g1785 . 11 152 Response Regulator Gene Family AT3G48100 60.6 4.6e-41 164.9
Cre04g0540 . 10 156 Response Regulator Gene Family AT3G48100 57.1 2.3e-40 162.5
Cre05g2843 . 4 170 Response Regulator Gene Family AT3G48100 52.7 2.5e-39 159.1
Cre10g1736 . 3 156 Response Regulator Gene Family AT3G48100 52.6 2.8e-38 155.6
Cre07g0902 . 21 152 Response Regulator Gene Family AT3G48100 56.8 8.9e-37 150.6
Cre05g2664 . 1 201 Response Regulator Gene Family AT1G59940 60.0 4.4e-55 212.2
Cre06g2534 . 32 177 Response Regulator Gene Family AT1G59940 66.4 5.7e-47 185.3
Cre10g1736 . 5 154 Response Regulator Gene Family AT1G59940 56.7 2.3e-40 163.3
Cre09g1785 . 5 153 Response Regulator Gene Family AT1G59940 58.4 4.0e-40 162.5
Cre04g0540 . 11 154 Response Regulator Gene Family AT1G59940 56.3 9.8e-39 157.9
Cre05g2843 . 11 156 Response Regulator Gene Family AT1G59940 58.2 1.3e-38 157.5
Cre07g0902 . 16 151 Response Regulator Gene Family AT1G59940 60.3 4.9e-38 155.6
Cre05g2664 . 28 185 Response Regulator Gene Family AT1G10470 71.5 8.2e-54 207.6
Cre06g2534 . 32 161 Response Regulator Gene Family AT1G10470 72.3 2.8e-46 182.6
Cre10g1736 . 5 162 Response Regulator Gene Family AT1G10470 54.4 6.7e-40 161.4
Cre09g1785 . 5 158 Response Regulator Gene Family AT1G10470 57.1 3.3e-39 159.1
Cre04g0540 . 17 154 Response Regulator Gene Family AT1G10470 59.4 2.8e-38 156.0
Cre05g2843 . 11 178 Response Regulator Gene Family AT1G10470 51.2 1.4e-37 153.7
Cre07g0902 . 21 151 Response Regulator Gene Family AT1G10470 61.1 1.8e-37 153.3
Cre06g2534 . 16 177 Response Regulator Gene Family AT3G48100 69.3 1.4e-53 206.5
Cre05g2664 . 29 162 Response Regulator Gene Family AT3G48100 71.6 3.2e-50 195.3
Cre09g1785 . 11 152 Response Regulator Gene Family AT3G48100 60.6 4.6e-41 164.9
Cre04g0540 . 10 156 Response Regulator Gene Family AT3G48100 57.1 2.3e-40 162.5
Cre05g2843 . 4 170 Response Regulator Gene Family AT3G48100 52.7 2.5e-39 159.1
Cre10g1736 . 3 156 Response Regulator Gene Family AT3G48100 52.6 2.8e-38 155.6
Cre07g0902 . 21 152 Response Regulator Gene Family AT3G48100 56.8 8.9e-37 150.6
Cre06g2534 . 28 166 Response Regulator Gene Family AT5G62920 74.8 1.1e-50 196.8
Cre05g2664 . 25 175 Response Regulator Gene Family AT5G62920 66.9 1.0e-48 190.3
Cre09g1785 . 11 152 Response Regulator Gene Family AT5G62920 60.6 3.9e-40 161.8
Cre04g0540 . 12 156 Response Regulator Gene Family AT5G62920 57.2 1.1e-39 160.2
Cre10g1736 . 10 156 Response Regulator Gene Family AT5G62920 55.1 7.4e-39 157.5
Cre05g2843 . 11 173 Response Regulator Gene Family AT5G62920 51.2 2.4e-37 152.5
Cre06g2534 . 32 182 Response Regulator Gene Family AT1G19050 71.4 7.1e-51 197.6
Cre05g2664 . 23 185 Response Regulator Gene Family AT1G19050 58.5 7.6e-45 177.6
Cre04g0540 . 11 156 Response Regulator Gene Family AT1G19050 54.8 3.1e-38 155.6
Cre05g2843 . 8 161 Response Regulator Gene Family AT1G19050 53.2 3.1e-38 155.6
Cre10g1736 . 8 156 Response Regulator Gene Family AT1G19050 53.0 9.0e-38 154.1
Cre07g0902 . 21 152 Response Regulator Gene Family AT1G19050 60.6 2.0e-37 152.9
Cre09g1785 . 7 155 Response Regulator Gene Family AT1G19050 53.0 3.4e-37 152.1
Cre04g0540 . 8 264 Response Regulator Gene Family AT2G41310 53.1 2.4e-60 229.2
Cre10g1736 . 1 157 Response Regulator Gene Family AT2G41310 71.3 2.0e-54 209.5
Cre09g1785 . 1 154 Response Regulator Gene Family AT2G41310 63.9 1.4e-47 186.8
Cre08g0534 . 7 158 Response Regulator Gene Family AT2G41310 59.1 1.0e-42 170.6
Cre05g2664 . 25 158 Response Regulator Gene Family AT2G41310 59.2 1.9e-41 166.4
Cre06g2534 . 29 162 Response Regulator Gene Family AT2G41310 61.0 1.9e-41 166.4
Cre07g0902 . 15 152 Response Regulator Gene Family AT2G41310 55.6 6.2e-40 161.4
Cre04g0540 . 8 264 Response Regulator Gene Family AT3G57040 53.1 1.9e-63 239.6
Cre10g1736 . 1 157 Response Regulator Gene Family AT3G57040 73.9 6.4e-56 214.5
Cre05g2843 . 4 160 Response Regulator Gene Family AT3G57040 64.8 2.0e-49 193.0
Cre09g1785 . 8 154 Response Regulator Gene Family AT3G57040 66.7 2.6e-49 192.6
Cre08g0534 . 11 174 Response Regulator Gene Family AT3G57040 56.4 2.1e-43 172.9
Cre05g2664 . 25 158 Response Regulator Gene Family AT3G57040 59.4 2.8e-43 172.6
Cre06g2534 . 28 171 Response Regulator Gene Family AT3G57040 58.2 1.2e-41 167.2
Cre07g0902 . 18 152 Response Regulator Gene Family AT3G57040 56.7 4.2e-39 158.7
Cre06g2534 . 26 188 Response Regulator Gene Family AT1G74890 70.3 2.6e-53 205.7
Cre05g2664 . 25 187 Response Regulator Gene Family AT1G74890 61.2 6.2e-47 184.5
Cre05g2843 . 5 161 Response Regulator Gene Family AT1G74890 55.4 2.2e-39 159.5
Cre04g0540 . 12 172 Response Regulator Gene Family AT1G74890 52.1 2.8e-39 159.1
Cre09g1785 . 11 147 Response Regulator Gene Family AT1G74890 58.4 1.4e-38 156.8
Cre10g1736 . 8 154 Response Regulator Gene Family AT1G74890 54.4 2.4e-38 156.0
Cre07g0902 . 21 148 Response Regulator Gene Family AT1G74890 60.2 5.9e-37 151.4
Cre07g0902 . 21 153 Response Regulator Gene Family AT2G40670 70.1 2.2e-47 185.7
Cre05g2664 . 26 159 Response Regulator Gene Family AT2G40670 56.9 4.5e-40 161.4
Cre10g1736 . 6 156 Response Regulator Gene Family AT2G40670 54.6 7.7e-40 160.6
Cre06g2534 . 32 163 Response Regulator Gene Family AT2G40670 60.0 3.3e-38 155.2
Cre04g0540 . 13 156 Response Regulator Gene Family AT2G40670 51.7 8.0e-37 150.6
Cre07g0902 . 21 153 Response Regulator Gene Family AT3G56380 70.9 9.4e-48 186.8
Cre06g2534 . 18 163 Response Regulator Gene Family AT3G56380 57.8 3.2e-40 161.8
Cre05g2664 . 23 159 Response Regulator Gene Family AT3G56380 52.9 4.2e-40 161.4
Cre10g1736 . 6 156 Response Regulator Gene Family AT3G56380 52.6 1.0e-38 156.8
Cre09g1785 . 11 155 Response Regulator Gene Family AT3G56380 54.8 6.8e-38 154.1
Cre08g1683 . 256 460 Response Regulator Gene Family AT3G16857 53.8 2.4e-54 210.7
Cre06g1238 . 30 255 Response Regulator Gene Family AT4G16110 66.7 2.3e-79 293.9
Cre05g0777 . 18 242 Response Regulator Gene Family AT4G16110 67.0 8.9e-79 292.0
Cre05g1811 . 12 233 Response Regulator Gene Family AT4G16110 60.2 2.2e-61 234.2
Cre08g1683 . 214 439 Response Regulator Gene Family AT4G16110 54.5 1.0e-58 225.3
Cre06g2086 . 17 249 Response Regulator Gene Family AT4G16110 53.0 9.6e-57 218.8
Cre11g0834 . 421 669 Response Regulator Gene Family AT4G16110 51.7 1.9e-52 204.5
Cre11g0834 . 416 743 Response Regulator Gene Family AT4G31920 51.2 8.8e-80 295.0
Cre06g1238 . 29 284 Response Regulator Gene Family AT4G31920 55.5 1.1e-71 268.1
Cre05g0777 . 16 271 Response Regulator Gene Family AT4G31920 54.1 1.1e-69 261.5
Cre08g1683 . 215 463 Response Regulator Gene Family AT4G31920 50.4 4.8e-62 236.1
Cre05g0777 . 99 286 Response Regulator Gene Family AT1G67710 50.3 1.9e-40 164.1
Cre05g1811 . 93 255 Response Regulator Gene Family AT1G67710 53.8 3.2e-40 163.3
Cre06g2086 . 99 269 Response Regulator Gene Family AT1G67710 50.8 2.0e-37 154.1
Cre06g2086 . 16 390 Response Regulator Gene Family AT2G25180 56.2 3.6e-103 372.9
Cre05g0777 . 18 291 Response Regulator Gene Family AT2G25180 55.9 1.5e-77 287.7
Cre08g1683 . 215 460 Response Regulator Gene Family AT2G25180 55.6 9.8e-69 258.5
Cre06g1238 . 92 325 Response Regulator Gene Family AT2G01760 51.4 8.1e-54 208.0
Cre06g2086 . 79 303 Response Regulator Gene Family AT2G01760 52.4 1.6e-49 193.7
Cre08g1683 . 276 463 Response Regulator Gene Family AT2G01760 51.0 3.9e-48 189.1
Cre08g1683 . 213 462 Response Regulator Gene Family AT5G58080 50.6 7.3e-62 235.7
Cre01g1541 . 598 1143 Response Regulator Gene Family AT5G61380 50.5 1.3e-140 497.3
Cre04g0965 . 38 205 Response Regulator Gene Family AT5G60100 68.6 3.6e-54 209.5
Cre09g2496 . 53 185 Response Regulator Gene Family AT5G60100 62.4 6.8e-45 178.7
Cre04g0965 . 67 205 Response Regulator Gene Family AT5G24470 55.4 3.8e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012253 2 1 2 2 2 0 1 1 0 0 0 0 1 1 1 1 0 2 1 1 0 1 1 1 1 0 1 3 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53952 PF00072 Response_reg 9.80E-21 CL0304 Cre TR