Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2540 ATGGCTTTCTTTCCTCCTCCCGCTTTCCTTTTTGCAATTTTGCTATCTGTTGTTCCATTCTCAGTTGAATCGAAACTTTCTCTTGATTATTACCAGAAAACTTGCCCCGATTTTGCCAGAATCGTCCGTGAAACCGTCGCTAACAAGGTGGCTTCTAGCCCAACCACCACCGCCGCAACTATGCGTCTCTTCCTCAACGATTGTTTAGTTGGAGGTTGCGATGGCTCTGTTCTCGTTGCTTCTAACGCCTTCAATCACGCCGAGCGCGATGCTGAAATCAATCTTTCTCTTCCAGGAGACGCGTTCGACGTCGTCGCTCGATCGAAGATCACCTTAGAGCTTTCTTGCCCCGGGATCGTCTCTTGTTCCGACGTATTAGCACAAGCGACTCGCGATCTCATCGCGATTGCAGGCGGACCGTCGTACAATGTTCAATTAGGGCGAAAAGACAGCCTGGTATCGAAATCTTCCGAAGTGGAAGGCAATATTCCGAAGGCGAATCAAACAATTGACGAGATGATTAAGCTATTCACATCGAAAGGATTCACGATTCAAGAAATGGTAGCGTTGTACGGCGGACGAACAATCGGATTCTCAAATTGCAAGGAATTCAGCGATCGTATCTTCAAGTTTAGCAAGGAAACACCAACAGATCCAGAGATTCATCCAAAGTTTGCAGAGGCTTTGAAAAAGACTTGCGAAGGATATGAGAAGAATCCGGGAATGTCGGCTTACAGTGACGCCGTAACGCCGGGGAAATTCGATAATGTGTATTACCAGAATTTGCTTAGGGGAATGGGGTTATCGGCGTCGGATCATGCGTTGGTGAAGGATCCGAGAACGAGGAAATTCGTGGAGATGTACGCCGGAAATCAAGCGTTGTTCTTCAAGGATTTTGCACACGCCATGGAGAAGATGAGCGTTCGTGAAGTGAAAACCGGTGGGAAAGGAGAAGTGAGGAGGAAATGCGATGTGTTCAATGAAATCCACACTTGA 996 47.29 MAFFPPPAFLFAILLSVVPFSVESKLSLDYYQKTCPDFARIVRETVANKVASSPTTTAATMRLFLNDCLVGGCDGSVLVASNAFNHAERDAEINLSLPGDAFDVVARSKITLELSCPGIVSCSDVLAQATRDLIAIAGGPSYNVQLGRKDSLVSKSSEVEGNIPKANQTIDEMIKLFTSKGFTIQEMVALYGGRTIGFSNCKEFSDRIFKFSKETPTDPEIHPKFAEALKKTCEGYEKNPGMSAYSDAVTPGKFDNVYYQNLLRGMGLSASDHALVKDPRTRKFVEMYAGNQALFFKDFAHAMEKMSVREVKTGGKGEVRRKCDVFNEIHT 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33040600 33041595 - CrPI670011_06g025400.1 Cre06g2540 502002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2540 331 Pfam Peroxidase 42 291 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g2540 331 Gene3D - 29 327 - -
Cre06g2540 331 FunFam Peroxidase 29 175 - -
Cre06g2540 331 ProSiteProfiles Plant heme peroxidase family profile. 25 327 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g2540 331 PANTHER - 13 327 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g2540 331 FunFam Peroxidase 164 306 - -
Cre06g2540 331 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g2540 331 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g2540 331 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g2540 331 PRINTS Haem peroxidase superfamily signature 247 262 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g2540 331 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g2540 331 Gene3D Peroxidase, domain 2 164 306 - -
Cre06g2540 331 CDD secretory_peroxidase 25 326 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cre06g2540 331 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g2540 331 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g2540 331 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g2540 331 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g2540 331 PRINTS Plant peroxidase signature 261 278 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g2540 331 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g2540 331 PRINTS Plant peroxidase signature 245 260 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g2540 331 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g2540 331 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g2540 331 SUPERFAMILY Heme-dependent peroxidases 26 327 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2540 Cre-Chr6:33040600 Cre11g1193 Cre-Chr11:9770968 1.20E-71 dispersed
Cre01g1290 Cre-Chr1:26128940 Cre06g2540 Cre-Chr6:33040600 5.60E-122 wgd
Cre01g0584 Cre-Chr1:5127620 Cre06g2540 Cre-Chr6:33040600 4.70E-102 wgd
Cre10g1596 Cre-Chr10:30072817 Cre06g2540 Cre-Chr6:33040600 3.90E-104 wgd
Cre04g1364 Cre-Chr4:32468319 Cre06g2540 Cre-Chr6:33040600 1.10E-69 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2540 K00430 - csv:101213178 586.26