Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2549 ATGCCCGAAACGGAAAGGAGGAAAGTGGGACCCATATATGACGAAATCAAGCAGCGAAGGAAGGCCCTTGGATTGAAATGTCAGACTCAGAGCCACCAAAAAACCCACCCGAACTGCCCGATCTGCCCTGGACTGCCCGGACTCGGCTCTCTACCAAGTACCAAGTACACATTTCCTTTCTGCCGTCTGGCTTTCTCTTTCTCTTTCTCTTCTCCCACAAACTCACAACCTTCCCCGTTTGGCAGTATTTGTATTGATCTAGGGTTTCTTAGTAAGCCGATAGCTTTGAATTGGCTTTCCTCTGTCCAATTAGGGTTAGGATTGATGGTACTCGTTCGGCGTGAAGGTGGGATCGAGGCTGGAATTGGGGAAAATGCTAGGCTATGCATGGGCGTCGAGATCGTAGAAGCAGATGGTTCTTCGTCATCGTCTTCGTCTGCACCGAATTCGTTTTGTAAGGGTGGACGTAGGATTAGTGTTGGTGATTGTGCTCTTTTCAAACCCCCCCAAGATTCCCCACCTTTTATTGGCATAATCCGGTGGTTGACGGCTGGTAAGGAGAATAAGTTGAAGTTAGGTGTGAATTGGCTTTATCGATCTTCTGAACTAAAGCTCGGCAAAGGCATCCTTTTGGAAGCTGCGCCAAACGAAGTCTTCTATTCCTTTCATAAGGATGAAATTCCTGCTGCATCTTTACTCCATCCGTGTAAAGTTGCATTTCTTCCAAAGGACGTTGAACTTCCATCAGGGATTTCGTCATTTGTGTGTCGAAGAGTGTATGACATAACAAATAAGTGTTTATGGTGGCTAACCGATCAGGATTATATTAATGAGCGTCAGGAAGAAGTAGATCAATTGTTGTATAAGACAAGATTAGAAATGCATGCTTCTGTGCAACCCGGTGGTCGATCACCGAAGCCTACAAGTGGTCCAACATCAACATCTCAGTTAAAAGCTAATTCAGATAGTGTTCAAACCACTGCCTTTCCTTCTCACACAAAAGGCAAGAAAAGAGAAAGGAGTGACCAAGGATTAGAATCTGTCAAACGAGAACGCATCATCAAAGCTGATGAAGGGGATTCTGCTAACTGCAGATTGGAAAATATTTTGAAGTCGGAGATTGCAAAAGTTGCTGAAAAAGGAGGCTTAGTTGATTCTGAAGCTGTGGAGAAATTGGTGCAGCTTATGCTGACAGATAGAAATGACAAAAAAATTGATTTGGCTGGCAGATCAGCACTTGCAGGTGTGATAGCTGCCACAGATAAGGTTGAGTGCCTTAGTCAGTTTGTGCATCTTAAGGGTTTACCTGTACTTGATGAATGGCTCCAAGAGGTTCACAAGGGAAAAATTGGCAGTGGTGGTAGCCCCAAGGATAGCGACAAAGCAGTTGAGGAATTTCTCCTGGTTTTGCTTCGTGCCCTTGATAAACTACCTGTAAATCTTCCTGCTTTACAAATGTGCAACATTGGAAAGTCTGTGAATCATTTACGCTCGCATAAGAATTTGGAAATTCAGAAGAAAGCAAGGAGCTTAGTGGACACATGGAAAAAACGTGTTGAAGCTGAAATGAATATTAATGATGCAAAGTCTGGTTCAAACCAAGCTGTTGCATGGAGTGCAAGAACTCGTCCCTCTGAAGTTTCTCATGGAGGGAGGAATCAAGATGCATCCTCTGAAGTTGCCATGAAGAGCTCGGTTTCCCAGCTTTCTACATCCAAATCTGCTTCAGTTAAGCTTGCACAGGATGACAGTGTTACAAGATCTGCATCTGCCTCTCCTGGCTCTATGAAACCAGTTTTATCACCTGCATCAGCAAGTATTAACTCGAAAGATGGTTCTTCCAGGAATCCGGGTGTTTGTGGCACAACTGATCTTGCTCAAACTATTGCCAGGGATGAAAAGAGTAGCAGTTCCAGTCAGTCCCACAATAATAGTCAATCCTGTTCTAGTGAACATGGTAAAAGTGGTGGTTTAGGGAAGGAGGATGCAAGAAGCTCTACTGCTGGTTCAATGAGTGTGAATAAGATCTCAGGTGGTGGATCTCGCCAGCGCAAGTCAGTTAATGGGTTTCCTGGTCCTGTTCTCTCTGGTGGTCAACGGGATGTAGGGTCGGGGAAAAGTTCTTTGCATAGAAACACAGTTTTGGAGAGATCATCACAGTCTGGAATGACTTTTGAAAAGGCATCTGATGGTCCTGTTGCTGAGGGAAACAGTCCTAAATTGATAGTGAAGATCACCAATCGTGGCCGGAGTCCTGCACAGAGTGCTAGTGGAGGATCTTTTGAAGATCCTTCAACAATAAATAGCAGGGCTTCTTCTCCTCCACTTTCGGATAAACATGATCAACTTGATCACAGTAAGAGTGATACATGTCAACCTAATATTACTGGAGATGTGAATGCGGAGTCCTGGCAGAATAGTGATGTAAAAGATACAGTGATTGGTGCTGATGATGGTGATGGATCTCCTGCTGCTGTAAATGGTGATGAGTGCTGTCGGGCTGCAGAAGATGTAACAGTTTCAAAGGCTACTCCGTCATCATTAGCGAATGATCATAAGAATGGGAAGTTACATGAGGCTTCTTTCAGCTCCATAAATGCTTTAATTGAGAGCTGTATTAAATGCTCTGAAGCTAGTATGCCTACCTCACTCACGGATAATGTCGGAATGAATTTACTCGCTAGTGTAGCAGCTGTCGAGATGTCGAAGTCTGATTTTGTTTTGCCTTCCGATACTCAAGGAAATATGACTGCAGTGGACCGCTCTTCTAGAGGCAGTGATTATAAAGTCAAAGCATCTTGTCCTGAAGAGGATGCTAGAGATGACGTGCCGACGAATGATGCTATGGATGTTACTGAGCAGGGCGTGATCACCAGTTCCTTTGGAGGCAAAAATGTGGATGGAAGGTCTGCTTCGCAATCTGAAGAGAAACCGGTTGGAGATCTGAATGGTCATTCAAAATCTTCTGGTGTAAACTTGCAACAAACTGCTGTGGCGATGGCTGATGGGTGTATGAAAAAGAACGAGGTTGGAGGCCCTGCCTCGCCCACTAGGGTACCAGAGAAGGGCTTTGAGATCAAGGGGGCTAAACCAGTCAAGGACAGAAAGACGGCTGATGTAGTAGATGGAGAGAGCAGCCCAGAATCGAAACCAAAACCAAGCAGTTCTTTTCCTGATGGTGGCATGGTTGGTGATGGTATCTCGACTCGGGAAGTTGAAATGGATGTTCTTGATGAGCCTTTGCATCGGCGGCAAGACGTTGATGGCAATACGAATAATAGACTGAATGGTATTAGTACAGCAGATCAAAGGTTATCTTCCAAGTTGAACAGTGATTCTGCTAAATTAAGGAACGATGGATTACTTCAGGCTTCAGGCTCTTCAAGTGATCTGGTTTCTGTAAATGCAAGTGGGATGAAGGGCGGGAAGGATGATGAAACCTCAGCTGATGTCAAACTTGAAAGACATCAAAGTGATTTGGATCCTATGCCTTCTGAGTCCCGAGGTTTAGGTGGCTTGTGTTCAGCTACCAACCACGAGGATGAGCATGTGGAGGAGAATTTGGAATCTAAAGAGAATACAGAGAGAAGTGGAGGACAAACACATCAAGGGCAATCTATTATTTCTACTGTCCAAGAAACCGAGCAGCCTAAGCCATCCAAGAGATCCAAATTAGCTGGTGTTGAAGCAGAAGAGGCAGAGGAGTCTACATCCACTGCCGCAGATGCTGGTTCCATGTCTGCTGTGGGGGTGTCAGATATGGATGCTAAGTTGGAATTTGATTTGAACGAAGGCTTTAATGTAGATGATGGAAAATGCAGTGAGCCAAGCAGCTTTACACCATCTGGTTGTTTGTCAACTGTTCAGTTAATTAGTCCGTTGCCCCTTCCTGTATCTAATGTGACAAACAACATTCCTGCTTCAATTACAGTTGCAGCTGCAGCAAAAGGAGGTTTTGTACCACCTGATGATCTATTGAGGAGTAAAGGGGAACTTGGTTGGAAAGGATCAGCAGCCACCAGTGCTTTTCGACCTGCTGAACCTAGAAAAGTTCTAGAAATGCCACTAGGTCTTGCAACCACTCCACTTGCTGATGTTGCAGTCAGTAAAATTTCTCGACCCCCACTGGATATTGACTTGAATGTTCCTGATGAAAGGATTCTTGAGGATATGAATGCTCAGATGTCTACTCAGGAGGTGGCTTCTAAGTCTGACCTGGCTAATAATCGTGATCTGGCACATGGACGTTGTTCTGGAGGACTAGATCTTGACTTGAACCGAGTTGATGATGCTCCTGATCCAAGCAACTTCTCCTTGAACAATTGTCGTAGAATAGATACTCCTCTTAGTGTTAAATCATCTACTGTTCCTCTCAATGACAAGGTGAATTTTCGTAGGGACTTTGATTTAAATGGACCTATTGTTGATGAGGCCACTACTGAACCATCAATATTTCCTCAACATGCCAGAAGCAGTATGCCATCCCAGGCATCTGTTTCTGGCCTTTGGATGAACAATGCAGAAATGGGAAATTTTCCATCATGGTTTCCTCCAGGGAATGCCTATTCAGCTGTTGCAATTCCATCAATTTTGCCAGATAGAGCAGAACAGTCTTTTCCAGTTGTTGCAACAAATGGACCACCCAGGATTTTGGGACCCACAAGTGGTAGCAGTCCATATAGCCCTGATGTCTTTAGAGGGCCAGTATTATCATCGTCTCCGGCAGTGCCATTTCCTTCTGCAACTTTTCAATATCCTGTCCTGTCTTTTGGAAACAGCTTCCCTCTACCTTCAGCCACGTTTTCAGGTAACACAACAGCATACGTTGATTCATCATCTGGTGGCAGGCTTTGCTTCCCAGCAGTCCCTTCACAGTTCTTAGGTCCTCCTGGTACAGTTTCAACCCCTTATCCAAGACCTTATGTTGTCAGTCACTCAGATGGCGGCAACAATACTAGTTCTGATAGTAGTCGAAAGTGGGGAAGACAAGGTTTAGATCTAAATGCTGGTCCTGTAGTTCCAGACATTGAAGGAAGAGAGGAATCATCATCCTTGGTACCAAGGCAACTATCTGTTGCCGGTTCGCAGGCCACTGCCGAAGAGCATATGAGGGTTTACCAGCCAGCAATTGGCATAATGAAGAGAAAGGAGCCAGAGGGAGGATGGGATGGGTACAAACAGTCATCATGGTAG 5193 44.83 MPETERRKVGPIYDEIKQRRKALGLKCQTQSHQKTHPNCPICPGLPGLGSLPSTKYTFPFCRLAFSFSFSSPTNSQPSPFGSICIDLGFLSKPIALNWLSSVQLGLGLMVLVRREGGIEAGIGENARLCMGVEIVEADGSSSSSSSAPNSFCKGGRRISVGDCALFKPPQDSPPFIGIIRWLTAGKENKLKLGVNWLYRSSELKLGKGILLEAAPNEVFYSFHKDEIPAASLLHPCKVAFLPKDVELPSGISSFVCRRVYDITNKCLWWLTDQDYINERQEEVDQLLYKTRLEMHASVQPGGRSPKPTSGPTSTSQLKANSDSVQTTAFPSHTKGKKRERSDQGLESVKRERIIKADEGDSANCRLENILKSEIAKVAEKGGLVDSEAVEKLVQLMLTDRNDKKIDLAGRSALAGVIAATDKVECLSQFVHLKGLPVLDEWLQEVHKGKIGSGGSPKDSDKAVEEFLLVLLRALDKLPVNLPALQMCNIGKSVNHLRSHKNLEIQKKARSLVDTWKKRVEAEMNINDAKSGSNQAVAWSARTRPSEVSHGGRNQDASSEVAMKSSVSQLSTSKSASVKLAQDDSVTRSASASPGSMKPVLSPASASINSKDGSSRNPGVCGTTDLAQTIARDEKSSSSSQSHNNSQSCSSEHGKSGGLGKEDARSSTAGSMSVNKISGGGSRQRKSVNGFPGPVLSGGQRDVGSGKSSLHRNTVLERSSQSGMTFEKASDGPVAEGNSPKLIVKITNRGRSPAQSASGGSFEDPSTINSRASSPPLSDKHDQLDHSKSDTCQPNITGDVNAESWQNSDVKDTVIGADDGDGSPAAVNGDECCRAAEDVTVSKATPSSLANDHKNGKLHEASFSSINALIESCIKCSEASMPTSLTDNVGMNLLASVAAVEMSKSDFVLPSDTQGNMTAVDRSSRGSDYKVKASCPEEDARDDVPTNDAMDVTEQGVITSSFGGKNVDGRSASQSEEKPVGDLNGHSKSSGVNLQQTAVAMADGCMKKNEVGGPASPTRVPEKGFEIKGAKPVKDRKTADVVDGESSPESKPKPSSSFPDGGMVGDGISTREVEMDVLDEPLHRRQDVDGNTNNRLNGISTADQRLSSKLNSDSAKLRNDGLLQASGSSSDLVSVNASGMKGGKDDETSADVKLERHQSDLDPMPSESRGLGGLCSATNHEDEHVEENLESKENTERSGGQTHQGQSIISTVQETEQPKPSKRSKLAGVEAEEAEESTSTAADAGSMSAVGVSDMDAKLEFDLNEGFNVDDGKCSEPSSFTPSGCLSTVQLISPLPLPVSNVTNNIPASITVAAAAKGGFVPPDDLLRSKGELGWKGSAATSAFRPAEPRKVLEMPLGLATTPLADVAVSKISRPPLDIDLNVPDERILEDMNAQMSTQEVASKSDLANNRDLAHGRCSGGLDLDLNRVDDAPDPSNFSLNNCRRIDTPLSVKSSTVPLNDKVNFRRDFDLNGPIVDEATTEPSIFPQHARSSMPSQASVSGLWMNNAEMGNFPSWFPPGNAYSAVAIPSILPDRAEQSFPVVATNGPPRILGPTSGSSPYSPDVFRGPVLSSSPAVPFPSATFQYPVLSFGNSFPLPSATFSGNTTAYVDSSSGGRLCFPAVPSQFLGPPGTVSTPYPRPYVVSHSDGGNNTSSDSSRKWGRQGLDLNAGPVVPDIEGREESSSLVPRQLSVAGSQATAEEHMRVYQPAIGIMKRKEPEGGWDGYKQSSW 1730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33114844 33121596 + CrPI670011_06g025490.1 Cre06g2549 502011

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2549 1730 SMART TFS2_5 442 521 IPR003617 GO:0005634(InterPro)
Cre06g2549 1730 MobiDBLite consensus disorder prediction 951 969 - -
Cre06g2549 1730 MobiDBLite consensus disorder prediction 1007 1246 - -
Cre06g2549 1730 MobiDBLite consensus disorder prediction 1023 1046 - -
Cre06g2549 1730 MobiDBLite consensus disorder prediction 296 349 - -
Cre06g2549 1730 MobiDBLite consensus disorder prediction 1071 1089 - -
Cre06g2549 1730 MobiDBLite consensus disorder prediction 924 947 - -
Cre06g2549 1730 Pfam TFIIS helical bundle-like domain 470 519 IPR017923 -
Cre06g2549 1730 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 424 533 IPR035441 -
Cre06g2549 1730 MobiDBLite consensus disorder prediction 525 805 - -
Cre06g2549 1730 MobiDBLite consensus disorder prediction 1090 1135 - -
Cre06g2549 1730 ProSiteProfiles BAH domain profile. 156 271 IPR001025 GO:0003682(InterPro)
Cre06g2549 1730 MobiDBLite consensus disorder prediction 1217 1231 - -
Cre06g2549 1730 CDD TFIIS_I 444 520 - -
Cre06g2549 1730 SMART BAH_4 156 271 IPR001025 GO:0003682(InterPro)
Cre06g2549 1730 Pfam BAH domain 158 265 IPR001025 GO:0003682(InterPro)
Cre06g2549 1730 MobiDBLite consensus disorder prediction 701 726 - -
Cre06g2549 1730 ProSiteProfiles TFIIS N-terminal domain profile. 436 522 IPR017923 -
Cre06g2549 1730 MobiDBLite consensus disorder prediction 302 331 - -
Cre06g2549 1730 MobiDBLite consensus disorder prediction 526 653 - -
Cre06g2549 1730 MobiDBLite consensus disorder prediction 1197 1216 - -
Cre06g2549 1730 MobiDBLite consensus disorder prediction 1643 1698 - -
Cre06g2549 1730 MobiDBLite consensus disorder prediction 788 805 - -
Cre06g2549 1730 MobiDBLite consensus disorder prediction 917 990 - -
Cre06g2549 1730 MobiDBLite consensus disorder prediction 1645 1661 - -
Cre06g2549 1730 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 385 523 IPR035441 -
Cre06g2549 1730 MobiDBLite consensus disorder prediction 665 684 - -
Cre06g2549 1730 MobiDBLite consensus disorder prediction 332 349 - -
Cre06g2549 1730 MobiDBLite consensus disorder prediction 1178 1196 - -
Cre06g2549 1730 MobiDBLite consensus disorder prediction 1143 1162 - -
Cre06g2549 1730 MobiDBLite consensus disorder prediction 748 776 - -
Cre06g2549 1730 Gene3D - 143 368 IPR043151 -
Cre06g2549 1730 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 135 1730 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2549 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1988 Cre-Chr5:31962243 Cre06g2549 Cre-Chr6:33114844 2.60E-14 dispersed
Cre09g2248 Cre-Chr9:41681851 Cre06g2549 Cre-Chr6:33114844 4.20E-22 transposed
Cre10g1591 Cre-Chr10:29984862 Cre06g2549 Cre-Chr6:33114844 4.40E-255 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g704 . . . . Bpe12g00585 . . Bma12g01028 . . . . Car10g00132 . Sed08g1505 . Cpe04g01543 Bhi02g00413 Tan09g2404 Cmetu02g1332 . Hepe09g0183 . . Cla06g01645 Cam06g1830 Cec06g1879 Cco06g1885 Clacu06g1789 Cmu06g1731 Cre06g2549 . . Cone13ag0127 Cone19ag0131 . . . . Blo13g00047 Blo15g00276 . . Bpe07g00824 . . Bma08g00176 . Cmo10g00147 Cmo11g00110 . . . . . Cpe18g00833 . . . . . . . . . . . . . . Lsi06g01533 Csa01g00170 Chy02g02561 Cme02g01950
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003613 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 2 1 1 1 1 4 3 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53955 PF01426 BAH 2.20E-08 No_clan Cre TR