Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2555 ATGAGTAATGAGAGCAAGAGCAAGTCCCTAGCCATTGCAGCCAATAGCAAGAACAAGATAATCTCATTTCAGGTTTTTGGTTCTCTGTCCTTTCATTGTACTGTGGGAAAGCATTCTTGCTTGAGTTTGTTAGAGTTATCATCCACGGAGATGTTGGATTTTCCTCATACACCAAGAACGGTTCCACGGGTGATGACTGCTTCAGGAATATTTTCGGATAAGGACAGCGATTTGGAAGTTTCATCATCTAAATGCAGAGGGAGAAAAATTATAGTGGCAAATTTTCTCCCTCTTCATGCTAAAAAGGATCCAGATTCTGGAAAATGGAAATTCAGTTTTGATGAGGATTCAATTTTGCTTCAGCTGAAGGATGGCTTCTCACCTGATGTAGATGTTATATATGTTGGATCATTAAAGGTCGATGTTGATGTCCGAGAGCAAGATGAGGTTTCTCAGAAACTGCTGGAGGAATTCAACTGCGCACCAACTTTCATTCCTGCATACCTTCAGAAACAGTACTATCATGGATTCTGCAAGCAACATTTGTGGCCACTTTTTCATTACATGATGCCAATTTCCCCTTATCACGGATCTCGCTTTGATCGACATCTCTGGCAAGCGTATCTTTCAGTCAACAAAAGGTTTGCAGATAAAGTGATGGAGGTAATCAATCTTGAAGAAGATTATGTCTGGATTCATGATTATCACCTTATGGTTCTCCCTACTTTTTTGAGAAAACGCTACAGTCGAATTAAGCTCGGATTCTTCCTTCATAGTCTGTTTCCCTCATCAGAAATCTATCGAACTCTCCCTGTTAGAGATGAGATTCTGAGAGCATTACTTAACGTAGACCTAATCGGTTTCCATACATTTGATTATGCTCGCCACTTCCTATCTTGTTGTAGTAGACTGCTTGGTCTGGAGTATGAATCTAAACGTGGATATCTCACGCTCGAGTATTTTGGCCGTACGATATACATCAAGATTTTGCCTGTTGGAGTTCATATAGGTCGACTTGAATCTGCATTAAACCAACCGCACACTTCAATGAAGGTCAAGGAAATCAAAGAAAATCTCAAAGGAAAGAAACTTATTCTTGGTGTTGATGACATGGACATCTTTAAAGGTATTGGTCTGAAGTTATTAGCTATGGAACAGCTCTTGAAACAGCATCCAGAGTTAAGGGGCAATGTTGTTCTGGTGCAAATTCTAAATCCGGCACGGAGCAATGGGAATGATGTCCAGGAAGCAAAACGGGAAACTTATGAGATAACCAAAAGGATTAACAAGGTTTTTGGTTGTCCGGGATATGAACCTGTAATCTTGATTGATCATCCTATTCCTCCTCACGAGAAGATTGCATATTATGTATTAGCAGAGTGCTGCATTGTAAATGCTCTCAGGGATGGTATGAACTTAGTTCCGTATGAGTACATTGTTTGTCGACAGGGAACTTCAAAAATGGATGAACTCTTGGAAGTCTCCCCGAATTCACATCGTACCAGCACGATTGTCGTGTCCGAATTTATAGGTTGTTCACCATCTCTAAGTGGTGCAGTCAGGGTAAACCCCTGGGATTTTGATGCCGTAGCTGATGCACTTTATGCAGCTGTCACCATGCCTGCTTTAGAAAAGCAACTGAGGCACGAAAAGCATTACCGATATATTAGCTCTCACGATGTTGCTTACTGGGCTCGCAGTTTCTCACAAGATTTAGAGCGAGCATGCCGAGAACACTACAGTAAACGATGCTGGGGCATTGGTTTTGGTTTAAGTTTCAGAATTTTGTCACTCTCTCCAAGTTTCAGGAAGCTTTCCATTGAACACATTGGCTCTGCATATAGAAGCGCCTCTAGGAGGGCAATATTTCTGGATTACGACGGGACTGTGGTTTCTGAAACTTCGTTGGTTAAATCTCCGTCACCTGAAGTCATTTCTATCATCAACAACCTTTGCACGGATTCAAAGAACACTGTGTTTATAGTTAGTGGCAGGGGGAAAGATTCTCTCGGTTCATGGTTTGATTCGTGTAAGAATCTAGGTATTGCTGCTGAACATGGATACTATTTGAGGTGGAATAAGGATTCTGATTGGGAAGTTAGTCCATTAGCTGAAAACTTTTGTTGGAAAAGGATTGCAGAACCAGTGATGAAACTATATACTGAGGCCACCGATGGCTCATACATTGAGACCAAGGACAGTGCGTTGGTATGGCACCATCAAGACGCTGACCCTTATTTTGGTTCATGTCAGGCCATGGAGCTTTTGGACCACCTTGAAAATGTCCTTGCCAATGAACCCGTAGTTGTTAAAAGAGGTCAGCAGATCGTTGAAGTTAAACCTCAGGGTGTGACTAAAGGATTAGTTGCTGAAAGAGTTCTTTCCACAATGATCAACTCGAATAAAGCACCGGACTTTGTGTTGTGCATTGGAGATGATCGATCCGACGAAGACATGTTCGAGAGCATATCTAGCATAAGCTATAGCTCATCCCTTGCCAGCCCCCCAAAGATATTTGCCTGTACTGTGGGGCAAAAGCCTAGTAAAGCCAAATACTATTTAGATGATACCACCGACGTTTTGACCTTGCTTCAAAGCCTGGCCACTCCTTCTGCACATCAAACTGGAGAACACACCTTTACTGAGTCGGGATCGTCTCGATTGCCAGACTCTTTGCACAGTCACTGGTGCGAATGGGTTGAATTCAGGAAGATAATTGCTTGGCTAGAATATAGTGAACAGGTTTCAGATACAAATTACAATTAG 2766 42.05 MSNESKSKSLAIAANSKNKIISFQVFGSLSFHCTVGKHSCLSLLELSSTEMLDFPHTPRTVPRVMTASGIFSDKDSDLEVSSSKCRGRKIIVANFLPLHAKKDPDSGKWKFSFDEDSILLQLKDGFSPDVDVIYVGSLKVDVDVREQDEVSQKLLEEFNCAPTFIPAYLQKQYYHGFCKQHLWPLFHYMMPISPYHGSRFDRHLWQAYLSVNKRFADKVMEVINLEEDYVWIHDYHLMVLPTFLRKRYSRIKLGFFLHSLFPSSEIYRTLPVRDEILRALLNVDLIGFHTFDYARHFLSCCSRLLGLEYESKRGYLTLEYFGRTIYIKILPVGVHIGRLESALNQPHTSMKVKEIKENLKGKKLILGVDDMDIFKGIGLKLLAMEQLLKQHPELRGNVVLVQILNPARSNGNDVQEAKRETYEITKRINKVFGCPGYEPVILIDHPIPPHEKIAYYVLAECCIVNALRDGMNLVPYEYIVCRQGTSKMDELLEVSPNSHRTSTIVVSEFIGCSPSLSGAVRVNPWDFDAVADALYAAVTMPALEKQLRHEKHYRYISSHDVAYWARSFSQDLERACREHYSKRCWGIGFGLSFRILSLSPSFRKLSIEHIGSAYRSASRRAIFLDYDGTVVSETSLVKSPSPEVISIINNLCTDSKNTVFIVSGRGKDSLGSWFDSCKNLGIAAEHGYYLRWNKDSDWEVSPLAENFCWKRIAEPVMKLYTEATDGSYIETKDSALVWHHQDADPYFGSCQAMELLDHLENVLANEPVVVKRGQQIVEVKPQGVTKGLVAERVLSTMINSNKAPDFVLCIGDDRSDEDMFESISSISYSSSLASPPKIFACTVGQKPSKAKYYLDDTTDVLTLLQSLATPSAHQTGEHTFTESGSSRLPDSLHSHWCEWVEFRKIIAWLEYSEQVSDTNYN 921
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33151282 33156350 - CrPI670011_06g025550.1 Cre06g2555 502017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2555 921 Pfam Trehalose-phosphatase 623 857 IPR003337 GO:0005992(InterPro)
Cre06g2555 921 Gene3D Glycogen Phosphorylase B; 341 557 - -
Cre06g2555 921 Pfam Glycosyltransferase family 20 88 573 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cre06g2555 921 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 749 879 - -
Cre06g2555 921 NCBIfam HAD-IIB family hydrolase 621 822 IPR006379 -
Cre06g2555 921 SUPERFAMILY HAD-like 620 868 IPR036412 -
Cre06g2555 921 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 81 340 - -
Cre06g2555 921 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 619 736 - -
Cre06g2555 921 CDD HAD_TPP 621 860 - -
Cre06g2555 921 FunFam Alpha,alpha-trehalose-phosphate synthase 342 557 - -
Cre06g2555 921 Gene3D Glycogen Phosphorylase B; 81 340 - -
Cre06g2555 921 Gene3D - 749 881 IPR023214 -
Cre06g2555 921 Gene3D - 619 734 IPR023214 -
Cre06g2555 921 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 58 869 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Cre06g2555 921 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 88 577 - -
Cre06g2555 921 FunFam Trehalose-6-phosphate synthase 2 704 782 - -
Cre06g2555 921 NCBIfam trehalose-phosphatase 617 868 IPR003337 GO:0005992(InterPro)
Cre06g2555 921 CDD GT20_TPS 88 573 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2555 Cre-Chr6:33151282 Cre10g0401 Cre-Chr10:2861517 0.00E+00 dispersed
Cre05g2685 Cre-Chr5:37798535 Cre06g2555 Cre-Chr6:33151282 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2555 K16055 - csv:101209676 1597.79