Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2557 ATGCATAACATCGCGTATTCTCGATTAGGCGGACTTCACAAATCCCTTTCTCTCTACAGAAAAGTTCCATGGTGGGATCAAATTCTGAAACCCGATTCCGATTTCGTTGTTCGATGGAATCGCATTTTCCTCGTCACTTGCTTGATCGCTCTCTTCGTCGATCCTCTTTACTTTTACCTCATCATCATCGGCGGCCCTGCTTGTATGCGTTTCAACACTCGCCTTGGCATCGTCGTCACTTTCTTTCGCACCATTGTCGATTTCTTCTCCTTGTTTCACATTCTCATGAAGTTTCGCACTGCCTTTGTCGCCCCTAATTCTAGGGTTTTTGGCCGTGGCGACCTCGTTATGGACCCTTCCGCCATTGCTATGCGCTATATCAAGAAGGATTTTCTCATTGATCTTGCTGCTACGCTTCCCCTGCCCCAGATTGTGATTTGGTTCGTGATTCCAGCATTGAAAAACCCATCAGCAGCCCATGCCAACCACACTCTTGCATTCATTGTCCTCATTCAGTATGCACCCAGACTGTTTGTTATATTTCCTCTGAACAGACAGATCAATAAAACCACTGGGGCAATAGCCAAAACTGCTTGGGCTGGTGCAGCTTATAATCTCCTTCTATATTTGCTTGCTAGCCATGTGATAGGAGCTGCATGGTATGTAGCATCCATTCAACGTCAGGAAGAGTGCTGGAAAATAGAATGTAGGAAGGAGATGAATACCACTCATTCTCCTTCTTGCCAGCTTATTTTTCTGGACTGTGATAGTTTGGCTTGGCAAGAACGACAAGCTTGGCTAAGAGTTACTCATGTTCTTACAAACTGTGATGCACTAAACGATGAAAAGAAATTTGAGTTTGGAATGTTTGCTGATGCGTTCACTGATGAAGTTGCTTCAGCAAATTTTTTTGAGAAGTACTTCTACTGCCTTTGGTTTGGCTTAAAGAGTTTGAGTGCATATGGGCAAAATTTAACGACGAGCACTTATAGTGGTGAAATTTTATTTAGCATTGTGATTTGCTCCTTGGGATTGGTTCTGTTTTCACACCTCATAGGCCAAGTGCAGAGCTATCTGCAATCCACAACAGCTAGACTTGAACAGTGGAGAGTAAAACGAAGAGACACAGAGGAATGGATGAGGCATCGACAGTTACCCCTTCATTTGCAAGAACGAGTTCGTCGATTCGTTCAATATAAATGGATTGCAACTCGAGGTGTAGACGAAGAGTCGATCTTGCGCTCTTTACCTCTGGATCTTCGTCGTCAAATTCAAAGACATCTTTCTCTTGCACTCGTTCGCCGTGTTCCCTTTTTTGCACAAATGGACGGTCAACTATTGGATGCCATATGCGAGCGTCTCGTCTCGTCCTTGAATACCAAAGACACATTCATAACCAGGGAGGGAGATCCAGTAAATGAGATGCTCTTCATCATCAGAGGTCAACTAGAGAGCTCCACCACCAATGGTGGCAGGTCAGGATTTTTCAACTCCATCACTCTCAGACCGGGCGACTTCTGCGGCGAAGAACTGTTAACATGGGCCTTAGTCCCATCCCCTAGCCTTAGCTTCCCCTCCTCAACTCGAACTGTGAAGTCGCTGACCGAAGTCGAGGCATTCGCACTTCGAGCCGAAGATCTCAAGTTTGTAGCTAGCCAGTTCAAGCGCCTCCATAGCAAGAAACTCCAACATGCTTTTAGATATTATTCCCACCAATGGAGGACTTGGGGATCTTGCTTCATACAAGCTGCTTGGAGAAGATATGTGAAAAGAAAGTTAGCTATGGAATTGGCAAGACAAGAGGAGCTTTATTACACAACAATATTGGACCAAGATTCTAGCCATGGCAGTGAAATGGAAGGTGAAGGAGATGGTGAAACTAGTGGCTCCAAAAAAAACAGTAAAAACAAAGCCCAAAATCTTGGAATAACAATGTTGGCTTCAAAATTTGCAGCAAATACAAGAAGAGGAGTTAACCAAAAACTGGCTGCACTTGACAATGATGTCACCAGCTTGAAAATGCCTAAGCTGTTTAAGCCTGATGAACCAGATTTCTCTGCTTTCCAAGATGAGAATTGA 2079 44.25 MHNIAYSRLGGLHKSLSLYRKVPWWDQILKPDSDFVVRWNRIFLVTCLIALFVDPLYFYLIIIGGPACMRFNTRLGIVVTFFRTIVDFFSLFHILMKFRTAFVAPNSRVFGRGDLVMDPSAIAMRYIKKDFLIDLAATLPLPQIVIWFVIPALKNPSAAHANHTLAFIVLIQYAPRLFVIFPLNRQINKTTGAIAKTAWAGAAYNLLLYLLASHVIGAAWYVASIQRQEECWKIECRKEMNTTHSPSCQLIFLDCDSLAWQERQAWLRVTHVLTNCDALNDEKKFEFGMFADAFTDEVASANFFEKYFYCLWFGLKSLSAYGQNLTTSTYSGEILFSIVICSLGLVLFSHLIGQVQSYLQSTTARLEQWRVKRRDTEEWMRHRQLPLHLQERVRRFVQYKWIATRGVDEESILRSLPLDLRRQIQRHLSLALVRRVPFFAQMDGQLLDAICERLVSSLNTKDTFITREGDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALVPSPSLSFPSSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGSCFIQAAWRRYVKRKLAMELARQEELYYTTILDQDSSHGSEMEGEGDGETSGSKKNSKNKAQNLGITMLASKFAANTRRGVNQKLAALDNDVTSLKMPKLFKPDEPDFSAFQDEN 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33183457 33188695 + CrPI670011_06g025570.1 Cre06g2557 502019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2557 692 ProSiteProfiles Adenosine to inosine editase domain profile. 33 89 IPR002466 GO:0003723(InterPro)|GO:0004000(InterPro)|GO:0006396(InterPro)
Cre06g2557 692 SUPERFAMILY cAMP-binding domain-like 367 563 IPR018490 -
Cre06g2557 692 FunFam Cyclic nucleotide-gated ion channel 1 436 554 - -
Cre06g2557 692 SMART cnmp_10 438 569 IPR000595 -
Cre06g2557 692 Gene3D Jelly Rolls 436 556 IPR014710 -
Cre06g2557 692 SUPERFAMILY Voltage-gated potassium channels 31 360 - -
Cre06g2557 692 MobiDBLite consensus disorder prediction 615 631 - -
Cre06g2557 692 Pfam Cyclic nucleotide-binding domain 461 550 IPR000595 -
Cre06g2557 692 PRINTS EAG/ELK/ERG potassium channel family signature 333 344 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre06g2557 692 PRINTS EAG/ELK/ERG potassium channel family signature 401 408 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre06g2557 692 PRINTS EAG/ELK/ERG potassium channel family signature 351 360 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre06g2557 692 PRINTS EAG/ELK/ERG potassium channel family signature 94 103 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre06g2557 692 PRINTS EAG/ELK/ERG potassium channel family signature 307 324 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre06g2557 692 MobiDBLite consensus disorder prediction 673 692 - -
Cre06g2557 692 Pfam Ion transport protein 39 365 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre06g2557 692 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 24 663 - -
Cre06g2557 692 Gene3D Helix hairpin bin 364 428 - -
Cre06g2557 692 MobiDBLite consensus disorder prediction 613 635 - -
Cre06g2557 692 CDD CAP_ED 438 569 IPR000595 -
Cre06g2557 692 Gene3D - 43 362 - -
Cre06g2557 692 ProSiteProfiles cAMP/cGMP binding motif profile. 438 568 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2161 Cre-Chr6:29450966 Cre06g2557 Cre-Chr6:33183457 3.00E-229 dispersed
Cre06g2557 Cre-Chr6:33183457 Cre10g1605 Cre-Chr10:30159402 1.30E-181 dispersed
Cre10g1579 Cre-Chr10:29826647 Cre06g2557 Cre-Chr6:33183457 6.90E-264 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2557 K05391 - csv:101209760 1251.11