Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2558 ATGGCTGCTCGTAGAGGAATCTGTTCTTTACTCTCTCGTTCTCTCTTATCTTCTTCCTCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCTTATGGGTTTAGTTCTTTTCTTCAATCTCATGGAAGAGTTTCAAGGTTCCAAAGAAGAGGGAATAGATTTAGCACATCTGCTTTGGCAGAGGAGGCACTCATCACTCCTCCTGTTCAGATCAATTACACTCAAAATTTGATTAATGGGCAGTTTGTAGATGCTGCATCAGGAAAAACGTTTCCGACTTACGATCCTCGCACTGGGGAAGTGATTGCTCATGTTGCCGAGGCCGATGCCGAGGATATTAACCGTGCGGTATCAGCAGCTCGAAAGGCATTTGATGAGGGGCCATGGCCGAGAATGACTGCTTATGAACGATCAAGGATATTACTGCGGTGTGCAGATTTGATTGAGAAACATATGACTGAACTTGCAGCATTGGAAACATGGAACAATGGGAAACCTTACGAACAATCAGTTAAATCTGAATTACCGTTACTCGTGCGCTTGTTTCACTATTACGCTGGCTGGGCAGACAAAATTCATGGCTTAACAGTTCCAGCTGATGGAAATCATCATGTGCAAGTATTACATGAACCAATTGGAGTAGCAGGACAGATAATTCCATGGAACTTTCCTCTAATTATGTTTGCTTGGAAAGTTGGTCCTGCTTTAGCCTGTGGCAACACTGTTGTCCTAAAGACTGCAGAGCAAACACCTCTGACTGCTCTTTATGTCGCTAAGTTGTTCCACGAGGCTGGTCTTCCTCCAGGGGTTCTAAATGTTGTTTCGGGCTATGGTCCGACGGCCGGTGCTGCCCTTGCTAGCCATATGGATGTGGACAAGCTAGCTTTCACCGGATCAACGAGCACAGGAAAAGTTGTACTTGAATTGGCAGCGAAAAGCAATTTGAAGCCAGTGACACTAGAGCTTGGAGGGAAATCACCTTTCATTGTTTGTGAGGATGCAGATGTTGATAAGGCTGTGGAGCTTGCTCATTTTGCTCTTTTTTTCAATCAGGGGCAATGTTGTTGTGCCGGATCTCGTACTTTTGTTCATGAGCATGTATACGACGAATTTGTCGAAAAATCGAGGGTACGTGCCCAAAGACGTGTTGTTGGTGACCCTTTCAAGAAGGGTGTTGAACAGGGTCCTCAGATTGACTCGGAGCAATTCGAAAAAGTCCTAAGATACATCAAATCTGGCATTGAAAGTGATGCTACTTTGGAATGTGGTGGTGGTAGACTTGGATCCAAGGGATACTTCATTGAGCCAACAGTTTTCTCAAATGTTAAGGACGATATGTTGATAGCGAAAGATGAAATATTTGGTCCAGTACAATCCATCTTGAAATTCAAGGACATTGATGAAGTAATTCAAAGGGCAAACTCTACTCGTTACGGTCTAGCTTCGGGAGTTTTCACATCGAACATCGACACAGCCAACACGCTAACACGGGGATTGAGAACGGGAACCGTGTGGCTCAATTGCTTTGACATCTTTGACGCTGCAATACCGTTTGGTGGGTATAAAATGAGTGGAATAGGAAGGGAGAAGGGAATTTACAGCCTCCAAAGTTACTTGCAAGTAAAAGCTGTTGTTACACCTCTCAAGAATCCAGCATGGTTGTGA 1671 44.17 MAARRGICSLLSRSLLSSSSASSSSSSSSSSSAYGFSSFLQSHGRVSRFQRRGNRFSTSALAEEALITPPVQINYTQNLINGQFVDAASGKTFPTYDPRTGEVIAHVAEADAEDINRAVSAARKAFDEGPWPRMTAYERSRILLRCADLIEKHMTELAALETWNNGKPYEQSVKSELPLLVRLFHYYAGWADKIHGLTVPADGNHHVQVLHEPIGVAGQIIPWNFPLIMFAWKVGPALACGNTVVLKTAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLAFTGSTSTGKVVLELAAKSNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTFVHEHVYDEFVEKSRVRAQRRVVGDPFKKGVEQGPQIDSEQFEKVLRYIKSGIESDATLECGGGRLGSKGYFIEPTVFSNVKDDMLIAKDEIFGPVQSILKFKDIDEVIQRANSTRYGLASGVFTSNIDTANTLTRGLRTGTVWLNCFDIFDAAIPFGGYKMSGIGREKGIYSLQSYLQVKAVVTPLKNPAWL 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33193422 33196608 + CrPI670011_06g025580.1 Cre06g2558 502020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2558 556 CDD ALDH_F2BC 73 548 - -
Cre06g2558 556 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 90 546 IPR016162 GO:0016491(InterPro)
Cre06g2558 556 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 328 517 IPR016163 GO:0016620(InterPro)
Cre06g2558 556 FunFam Mitochondrial aldehyde dehydrogenase 2 328 517 - -
Cre06g2558 556 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 322 329 IPR029510 GO:0016491(InterPro)
Cre06g2558 556 SUPERFAMILY ALDH-like 72 550 IPR016161 GO:0016491(InterPro)
Cre06g2558 556 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 350 361 IPR016160 GO:0016491(InterPro)
Cre06g2558 556 Pfam Aldehyde dehydrogenase family 84 546 IPR015590 GO:0016491(InterPro)
Cre06g2558 556 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 80 346 - -
Cre06g2558 556 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 43 548 - GO:0004029(PANTHER)
Cre06g2558 556 FunFam Aldehyde dehydrogenase, putative 518 544 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1980 Cre-Chr2:33269943 Cre06g2558 Cre-Chr6:33193422 1.30E-245 dispersed
Cre02g2183 Cre-Chr2:35470144 Cre06g2558 Cre-Chr6:33193422 1.60E-72 dispersed
Cre06g1867 Cre-Chr6:24887395 Cre06g2558 Cre-Chr6:33193422 1.90E-161 dispersed
Cre06g2537 Cre-Chr6:33005941 Cre06g2558 Cre-Chr6:33193422 1.40E-95 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2558 K00128 - csv:101209430 1000.73