Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2558 ATGGCTGCTCGTAGAGGAATCTGTTCTTTACTCTCTCGTTCTCTCTTATCTTCTTCCTCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCTTATGGGTTTAGTTCTTTTCTTCAATCTCATGGAAGAGTTTCAAGGTTCCAAAGAAGAGGGAATAGATTTAGCACATCTGCTTTGGCAGAGGAGGCACTCATCACTCCTCCTGTTCAGATCAATTACACTCAAAATTTGATTAATGGGCAGTTTGTAGATGCTGCATCAGGAAAAACGTTTCCGACTTACGATCCTCGCACTGGGGAAGTGATTGCTCATGTTGCCGAGGCCGATGCCGAGGATATTAACCGTGCGGTATCAGCAGCTCGAAAGGCATTTGATGAGGGGCCATGGCCGAGAATGACTGCTTATGAACGATCAAGGATATTACTGCGGTGTGCAGATTTGATTGAGAAACATATGACTGAACTTGCAGCATTGGAAACATGGAACAATGGGAAACCTTACGAACAATCAGTTAAATCTGAATTACCGTTACTCGTGCGCTTGTTTCACTATTACGCTGGCTGGGCAGACAAAATTCATGGCTTAACAGTTCCAGCTGATGGAAATCATCATGTGCAAGTATTACATGAACCAATTGGAGTAGCAGGACAGATAATTCCATGGAACTTTCCTCTAATTATGTTTGCTTGGAAAGTTGGTCCTGCTTTAGCCTGTGGCAACACTGTTGTCCTAAAGACTGCAGAGCAAACACCTCTGACTGCTCTTTATGTCGCTAAGTTGTTCCACGAGGCTGGTCTTCCTCCAGGGGTTCTAAATGTTGTTTCGGGCTATGGTCCGACGGCCGGTGCTGCCCTTGCTAGCCATATGGATGTGGACAAGCTAGCTTTCACCGGATCAACGAGCACAGGAAAAGTTGTACTTGAATTGGCAGCGAAAAGCAATTTGAAGCCAGTGACACTAGAGCTTGGAGGGAAATCACCTTTCATTGTTTGTGAGGATGCAGATGTTGATAAGGCTGTGGAGCTTGCTCATTTTGCTCTTTTTTTCAATCAGGGGCAATGTTGTTGTGCCGGATCTCGTACTTTTGTTCATGAGCATGTATACGACGAATTTGTCGAAAAATCGAGGGTACGTGCCCAAAGACGTGTTGTTGGTGACCCTTTCAAGAAGGGTGTTGAACAGGGTCCTCAGATTGACTCGGAGCAATTCGAAAAAGTCCTAAGATACATCAAATCTGGCATTGAAAGTGATGCTACTTTGGAATGTGGTGGTGGTAGACTTGGATCCAAGGGATACTTCATTGAGCCAACAGTTTTCTCAAATGTTAAGGACGATATGTTGATAGCGAAAGATGAAATATTTGGTCCAGTACAATCCATCTTGAAATTCAAGGACATTGATGAAGTAATTCAAAGGGCAAACTCTACTCGTTACGGTCTAGCTTCGGGAGTTTTCACATCGAACATCGACACAGCCAACACGCTAACACGGGGATTGAGAACGGGAACCGTGTGGCTCAATTGCTTTGACATCTTTGACGCTGCAATACCGTTTGGTGGGTATAAAATGAGTGGAATAGGAAGGGAGAAGGGAATTTACAGCCTCCAAAGTTACTTGCAAGTAAAAGCTGTTGTTACACCTCTCAAGAATCCAGCATGGTTGTGA 1671 44.17 MAARRGICSLLSRSLLSSSSASSSSSSSSSSSAYGFSSFLQSHGRVSRFQRRGNRFSTSALAEEALITPPVQINYTQNLINGQFVDAASGKTFPTYDPRTGEVIAHVAEADAEDINRAVSAARKAFDEGPWPRMTAYERSRILLRCADLIEKHMTELAALETWNNGKPYEQSVKSELPLLVRLFHYYAGWADKIHGLTVPADGNHHVQVLHEPIGVAGQIIPWNFPLIMFAWKVGPALACGNTVVLKTAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLAFTGSTSTGKVVLELAAKSNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTFVHEHVYDEFVEKSRVRAQRRVVGDPFKKGVEQGPQIDSEQFEKVLRYIKSGIESDATLECGGGRLGSKGYFIEPTVFSNVKDDMLIAKDEIFGPVQSILKFKDIDEVIQRANSTRYGLASGVFTSNIDTANTLTRGLRTGTVWLNCFDIFDAAIPFGGYKMSGIGREKGIYSLQSYLQVKAVVTPLKNPAWL 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33193422 33196608 + CrPI670011_06g025580.1 Cre06g2558 502020

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2558 556 CDD ALDH_F2BC 73 548 - -
Cre06g2558 556 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 90 546 IPR016162 GO:0016491(InterPro)
Cre06g2558 556 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 328 517 IPR016163 GO:0016620(InterPro)
Cre06g2558 556 FunFam Mitochondrial aldehyde dehydrogenase 2 328 517 - -
Cre06g2558 556 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 322 329 IPR029510 GO:0016491(InterPro)
Cre06g2558 556 SUPERFAMILY ALDH-like 72 550 IPR016161 GO:0016491(InterPro)
Cre06g2558 556 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 350 361 IPR016160 GO:0016491(InterPro)
Cre06g2558 556 Pfam Aldehyde dehydrogenase family 84 546 IPR015590 GO:0016491(InterPro)
Cre06g2558 556 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 80 346 - -
Cre06g2558 556 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 43 548 - GO:0004029(PANTHER)
Cre06g2558 556 FunFam Aldehyde dehydrogenase, putative 518 544 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2558 K00128 - - csv:101209430 1000.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1980 Cre-Chr2:33269943 Cre06g2558 Cre-Chr6:33193422 1.30E-245 dispersed
Cre02g2183 Cre-Chr2:35470144 Cre06g2558 Cre-Chr6:33193422 1.60E-72 dispersed
Cre06g1867 Cre-Chr6:24887395 Cre06g2558 Cre-Chr6:33193422 1.90E-161 dispersed
Cre06g2537 Cre-Chr6:33005941 Cre06g2558 Cre-Chr6:33193422 1.40E-95 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g722 . . . . Bpe12g00589 . . . . . . Cma11g00104 . Car11g00103 Sed12g1882 . Cpe04g01548 Bhi02g00432 Tan09g2233 Cmetu05g1877 . Hepe09g0192 . . Cla06g01654 Cam06g1838 Cec06g1889 Cco06g1894 Clacu06g1798 Cmu06g1740 Cre06g2558 . . Cone13ag0133 . . . . . . . . . . . . . . . Cmo11g00105 . . . . . . . . . . . . . . . . . . . . Lsi06g01544 Csa01g00160 Chy02g02570 Cme02g01959
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre06g1867 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 69.6 5.7e-211 730.7
Cre02g1980 . 51 535 Aldehyde Dehydrogenase Gene Family AT3G24503 54.7 4.3e-158 555.1
Cre06g2558 . 72 556 Aldehyde Dehydrogenase Gene Family AT3G24503 54.3 4.9e-154 541.6
Cre06g2558 . 55 556 Aldehyde Dehydrogenase Gene Family AT3G48000 80.5 7.4e-249 856.7
Cre02g1980 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 75.3 4.0e-247 850.9
Cre06g1867 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 54.6 1.3e-160 563.5
Cre02g1980 . 1 385 Aldehyde Dehydrogenase Gene Family AT1G23800 75.7 4.7e-171 597.8
Cre06g2558 . 51 400 Aldehyde Dehydrogenase Gene Family AT1G23800 77.7 2.5e-164 575.5
Cre06g1867 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 54.7 9.3e-103 370.9
Cre11g1995 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.6 1.7e-181 632.9
Cre11g1996 . 7 570 Aldehyde Dehydrogenase Gene Family AT4G34240 53.5 1.3e-165 580.1
Cre11g1996 . 153 568 Aldehyde Dehydrogenase Gene Family AT1G44170 71.4 2.6e-177 618.6
Cre11g1995 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 71.8 5.9e-177 617.5
Cre02g2627 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 50.5 1.8e-117 419.9
Cre07g1260 . 84 498 Aldehyde Dehydrogenase Gene Family AT1G44170 50.1 9.9e-116 414.1
Cre07g1260 . 21 500 Aldehyde Dehydrogenase Gene Family AT4G36250 62.9 1.5e-184 642.9
Cre02g2627 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 56.2 2.2e-159 559.3
Cre02g2183 . 37 665 Aldehyde Dehydrogenase Gene Family AT1G79440 60.0 5.2e-207 717.6
Cre01g0800 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 82.7 1.4e-240 829.3
Cre04g1447 . 259 693 Aldehyde Dehydrogenase Gene Family AT2G14170 68.3 2.5e-181 632.5
Cre06g2537 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.6 1.9e-251 865.1
Cre06g2537 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.3 3.5e-253 870.9
Cre02g2024 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 89.8 1.0e-268 922.5
Cre01g1329 . 21 555 Aldehyde Dehydrogenase Gene Family AT5G62530 77.8 1.9e-260 895.2
Cre06g1221 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 76.7 1.6e-276 948.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001596 2 4 2 1 4 2 3 2 2 1 2 2 3 1 2 3 2 3 3 2 2 3 2 2 2 2 2 2 3 5 71