Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2559 ATGAAAGAGAACAATGATGGATTTGTGCGTGCGGATCAGATTGATCTCAAGAGCTTGGATGAACAGCTTGAGAGGCATCTTAGTAGAGCCTTGACCATGGAGAAGAACAAGAAGAAAGATGAAGATGGTGGTAATAGCTTTCTCACTTCTGCACCTATCGCTCGCAGTAGGTCTACTAAAGTCGCCGCTAAGGACCGGCAGGAGTGGGAGATCGATCCGTCCAAATTGATTATCAAAAGCGTCATTGCTCGTGGTACTTTCGGCACCGTCCACCGCGGCGTTTACGACGGACTAGATGTCGCCGTCAAGTTGCTGGATTGGGGAGAAGAAGGTCACAGGACAGAAGCTGAAATTGCTTCACTAAGGGCCGCCTTTAAACAGGAAGTTGCTGTTTGGCATAAACTAGAGCATCCCAATGTTACTAAGTTTATAGGGGCAACGATGGGCTCCGCAGAGTTACAGATCCAAACTGAAAATGGTCTAATAGGCATGCCAAGCAACATATGTTGTGTTGTGGTGGAATATCTTGCTGGAGGCGCCCTTAAATCTTATCTCATAAAAAACAGGAGAAGGAAGCTAGCTTTCAAGGTGGTTGTCCAGCTGGCACTTGATCTTGCTAGAGGGTTGAGTTACCTTCATTCACAGAAGATTGTTCACAGAGATGTAAAGACAGAAAACATGCTGTTGGACAAAACACGTACAGTCAAAATTGCTGATTTTGGCGTTGCTAGAGTTGAGGCCTCAAATCCCAATGACATGACTGGGGAGACCGGGACACTTGGTTACATGGCTCCTGAGGTTCTCAATGGTAACCCATATAACAGGAAGTGTGATGTGTATAGTTTCGGCATCTGCCTGTGGGAAATTTATTGCTGTGATATGCCATATCCTGACCTTAGTTTCTCTGAAGTGACTTCTGCTGTTGTTCGTCAGAATCTGAGGCCAGAGATACCGAGATGTTGCCCGAGCTCTCTAGCAAATGTGATGAAGCGTTGCTGGGATGCGACCCCAGACAAGCGGCCTGAGATGGATGAAGTAGTTTCCATGTTGGAGGCCATTGACACTTCCAAGGGTGGAGGTATGATTCCTGTTGATCAAGCTCAGGGTTGTCTATGCTTTCGAAAATATAGAGGACCCTAA 1140 46.49 MKENNDGFVRADQIDLKSLDEQLERHLSRALTMEKNKKKDEDGGNSFLTSAPIARSRSTKVAAKDRQEWEIDPSKLIIKSVIARGTFGTVHRGVYDGLDVAVKLLDWGEEGHRTEAEIASLRAAFKQEVAVWHKLEHPNVTKFIGATMGSAELQIQTENGLIGMPSNICCVVVEYLAGGALKSYLIKNRRRKLAFKVVVQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDATPDKRPEMDEVVSMLEAIDTSKGGGMIPVDQAQGCLCFRKYRGP 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33198767 33202015 - CrPI670011_06g025590.1 Cre06g2559 502021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2559 379 FunFam Kinase suppressor of Ras 1 65 160 - -
Cre06g2559 379 FunFam Serine/threonine-protein kinase HT1 176 361 - -
Cre06g2559 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g2559 379 MobiDBLite consensus disorder prediction 30 50 - -
Cre06g2559 379 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 55 351 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
Cre06g2559 379 CDD STKc_MAP3K-like 82 350 - -
Cre06g2559 379 Coils Coil 16 36 - -
Cre06g2559 379 Pfam Protein tyrosine and serine/threonine kinase 78 350 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g2559 379 MobiDBLite consensus disorder prediction 30 44 - -
Cre06g2559 379 Gene3D Transferase(Phosphotransferase) domain 1 177 366 - -
Cre06g2559 379 ProSiteProfiles Protein kinase domain profile. 76 353 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g2559 379 SUPERFAMILY Protein kinase-like (PK-like) 57 350 IPR011009 -
Cre06g2559 379 Gene3D Phosphorylase Kinase; domain 1 65 159 - -
Cre06g2559 379 SMART serkin_6 76 353 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g2559 379 PRINTS Tyrosine kinase catalytic domain signature 277 299 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g2559 379 PRINTS Tyrosine kinase catalytic domain signature 321 343 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g2559 379 PRINTS Tyrosine kinase catalytic domain signature 211 229 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g2559 379 PRINTS Tyrosine kinase catalytic domain signature 173 186 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2559 Cre-Chr6:33198767 Cre09g0687 Cre-Chr9:6542981 2.60E-147 dispersed
Cre10g1568 Cre-Chr10:29708353 Cre06g2559 Cre-Chr6:33198767 5.50E-190 wgd
Cre04g1339 Cre-Chr4:32224581 Cre06g2559 Cre-Chr6:33198767 9.40E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64243 PF07714 PK_Tyr_Ser-Thr 3.70E-63 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2559 - - - 0.0