Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2561 ATGGCTGCTCGAGGTGTCGATTTCAAGTGGTATGACGGGTTTTTCTTGTCGATGCTCGCGACTAGTGTAGTAATAGTTTCTATCAATTGGAAGAGGTATCATACTTGTGTACATCCCTTGCATATATGGATCGTGGTTGATTATACTACTGTCTTTGTTTTTCGCCTGCTGATGTTTGTAGATAATGGACTTGCTGCTGGAATGGGTTTGGACTTTGGTTGGCAGCAGAGGTACGCTCGATTTTGTGGAAGAATTGTGGTCCTTTCAGTCCTTGCGCTTCTGCTATATCCATTTCTTTGGGCTTGGACTGCCATTGGTACTTTATGGTTTAGAGAAGCCCATAAATGTCTTCCTGAGCAAGGCCAGAAATGGGGATTCCTAATTTGGTTGCTTTTTAGCTACTGTGCACTCGTATGCATTGCTTGCATGTCATTGGGAAAGTGGTTAACTCGTAGACAAGCACTCTTGTTTCGGGCGCAACAAGGGATCCCTGTATCAGAATATGGGGTCTTGGTTGACATGATCCGAGTACCAGATTGGGCTTTTGAAGCCGCCGGACAAGAAACAAGGGTAATGGGCCAAGATGCTGCTGCATACCATCCTGGACTTTACTTGACTCCCGCTCAGAGGGAAGCTGTGGAAGCACTTATTGAGGAACTTCCCAAATTCAGGTTAAAGGCTGTTCCAACAGATTGCAGTGAATGTCCTATCTGTTTAGAAGAGTTTCATGTAGGGAATGAGGTTCGTGGCCTCCCTTGTGCTCATAATTTCCATGTAGGATGCATTGATGAGTGGCTTCGACTAAACGTGAAATGCCCAAGATGTCGGTGCTCGGTCTTCCCAAACCTTGATCTTAGTGCTCTGTCCAATCTCCGTCCCGACACTGATAGGCCATCTGCAAGTGTTGTTACAGCCAACCGTTATATGAGATCTCAACCTTCCAGCCAAAGTTATCTGGTGAGACTGCAGGGTCTGCTTCGACCTGTTCGCACAGAAAATGCTGATGCGCATGGTGATTTAGAGCCTGGTAGTGGTTTGGAAGCCGCTGAGAATGGGTCTGCCCATGACACCACTGTTCTGGAGACGGAACGGTCTCCCCTGAACGATAAGTGTCCATATCTTGCCATTTGCAAATCCCGGCAACTGTGTAATAGTAAAGCTCGAACATTAATTTTAGATCTCAGTACTCGACTGTTTTCAGCCGCCTGTGAAGGAAGATTGGGCACGTGCTTTTTGGAGAATTTGATCTTGCGACACCACTGGAGAATCCTCTATTTTGACAGGTGGGGTCATAAATTATTGGAAAATGTCTCTGGTTCAATGCACACTTCATTCTCCACCAGGAATGTGGCAATGACCGAGTGGAGCAGCCTTTACGAACGAATGTGGTTATTGGAGAAAGTGATTGGTCTGGTTTGTATGGCTTCCAATTTTGGCCACAACATCTCCAAGGAGCCCCACCATATGAAACCATAA 1476 46.14 MAARGVDFKWYDGFFLSMLATSVVIVSINWKRYHTCVHPLHIWIVVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRIVVLSVLALLLYPFLWAWTAIGTLWFREAHKCLPEQGQKWGFLIWLLFSYCALVCIACMSLGKWLTRRQALLFRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRVMGQDAAAYHPGLYLTPAQREAVEALIEELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRPDTDRPSASVVTANRYMRSQPSSQSYLVRLQGLLRPVRTENADAHGDLEPGSGLEAAENGSAHDTTVLETERSPLNDKCPYLAICKSRQLCNSKARTLILDLSTRLFSAACEGRLGTCFLENLILRHHWRILYFDRWGHKLLENVSGSMHTSFSTRNVAMTEWSSLYERMWLLEKVIGLVCMASNFGHNISKEPHHMKP 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33222737 33228261 + CrPI670011_06g025610.1 Cre06g2561 502023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2561 491 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Cre06g2561 491 SUPERFAMILY RING/U-box 217 284 - -
Cre06g2561 491 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
Cre06g2561 491 Pfam Ring finger domain 234 276 IPR001841 -
Cre06g2561 491 SMART ring_2 235 275 IPR001841 -
Cre06g2561 491 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 357 IPR044793 GO:0004842(InterPro)|GO:0010182(InterPro)
Cre06g2561 491 MobiDBLite consensus disorder prediction 334 355 - -
Cre06g2561 491 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2561 Cre-Chr6:33222737 Cre10g0877 Cre-Chr10:9997917 4.20E-09 dispersed
Cre01g1271 Cre-Chr1:25962521 Cre06g2561 Cre-Chr6:33222737 3.60E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2561 K16284 - csv:101208939 728.013