Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2564 ATGTGTAATAAAGGAAGCTTTTCGAAACAGAAAAAAATGCGAAAATCGGCAGTTGCAATTGCAGCCGTCGCCGGTGGGAGAGAGGTCGCGATTCTGCGTTCTCTGCTGATTTTGAACAATTGTGAGATGCCGGGAATTGTCATGGATGAAATCAATGAAGAAAGGGCTGTGAATAAACACAACGGTTCTTCGATTCATATGGAAGAGTCGTATGGAAACAAGTCGCCGAGGAGCGGGTTGAGTGTTCAGAGCCATGGAAGTGTTCATGTTGATTTCCCTGTTGATGGCTTGGTCGATACCTCTATTGAGAAGCTTTATGAGAATGTTTGTGATATGCAAAGTTCGGATCAGTCACCTTCAAGGCGTAGCTTTGGCTCTGATGGTGAGGAATCCAGGATTGATTCTGAACTGAATCATCTTGTTGGAGGAGAGATGAGGGAGGTAGAGATAATAAAGGAGGAAGAAGATATTGTTGAGAAGCCTGAACATGATTTTCCTAGTGATTCTATGAATCAATCACCATCTGCAGATAAGAAGGAGAAGGCTGAAAATACCCAACCTGGAAGCTCAAAACGTCTTTCTTCTGGAAAAAAAGCTCCTCACCTGCAATTGGACCACGAGACATCTCCAAAATCAAGTCCCAGGGGCAAGGGTTTGTTGGATAAACCCCCTATTAGCAGAAAGAATGAAAAGAATTTGAAAAAAAATAGTCCAGTTGCTGCTCAATTAAAGAAGCAGAAAGATTCACCTTTGAGGGGCTCAAAAATGCAGAATGGAATTGAGGATTTCGATGAATCAATGATGGATAATCCTGATCTAGGACCCTATCTACTTAAGCAAGCAAGGAATTTAGTTTCCTCAGGGGAGAATCTGCAGAAAGCTCTTTTAATAGCACTTCGTGCTGCAAAATCTTTTGAACTATCTGCAAATGGGAAACCCAACTTAGAACTTGTTATGTGTTTGCACGTCACAGCAGCAATATACTGCAGCTTAGGCCAGTACAGTGAGGCAATACCTCTATTGGAGCATTCCATCGAGATTCCTTCCATCAAGGAAGGGCATGAGCATGCACTGGCCAAATTTGCAGGGCACATGCAATTGGGTGATACCTATGCAATGCTGGGCCAGCTGGAAAATTCTCTAGTCTGTTATACAACTGGGTTAGAGGTGCAGAAACAAGTCCTAGGAGAAGCAGACCCCAGAGTTGGTGAGACCTATAGGTATTTAGCTGAAGCTCATGTTCAAGCTTTGCGATTTGATGAGGCTGAGAAATTTTGTCAAATGGCACTCGATATTCACAAAAAGAATGTTGGTCCTGCTTCTCTTGAGGAGGCTGCAGATAGGAGGCTTATGGGCCTCATATGTGAAACAAAAGGAGATCATGAAGCTGCACTCGAGCATCTAGTTTTAGCCAGCATGGCCATGGTGGCAAATGGCCAAGAGACTGATGTGGCTGCAGTTGATTGCAGCATTGGAGATTCATACTTATCCTTGTCCCGCTACGACGAGGCTGTTTTTGCTTATCAGAAAGCCCTCACTGTTTTCAAAACCACTAAGGGAGAAAACCATCCAGCAGTTGGTTCAGTATATGTTCGTCTTGCTGATTTATACAACAAGACTGGAAAAATGAGGGAGTCAGTATCGTACTGTGAAAATGCCCTTCGAATTTATGAAAAGCCTGTCCCAGGGATTCCTCCAGAGGAGATTGCTAGTGGTCTTACTGATATTGCAGCTATTTATGAATCAATGAATGATGTTGAGCAAGCAGTCAAATTATTACACAGGGCATTGAAGATATATAATGATGCCCCGGGACAGCAAAACACCATTGCTGGAATAGAAGCCCAGATGGGTGTCTTGTATTATATGTTGGGGAACTATTCTGAATCTTACGCCTCCTTCAACAATGCGATTCCAAAGCTTCGCAACAGTGGAGAGAAAAAATCTGCTTTCTTTGGTATAGCCCTTAATCAAATGGGTCTCGTGTGTGTTCAGAAATACGCTATAAATGAAGCTGTGGAGTTATTTGAAGAAGCCAAGAGCATACTAGAGCAAGAATATGGACCTTATCATCCTGATACTCTCGGGGTATACAGCAACCTTGCTGGAACATATGATGCAATTGGCAGGTTAGATGATGCAATTGAAATTTTGGAGTATGTTGTTGGCATGCGGGAGGAAAAACTTGGGACAGCCAATCCCGATGTCGATGATGAGAAGAGGAGGTTGTCTGAGTTGTTGAAAGAAGCAGGTAGAGTTCGGAGCCGAAAGGCGAGATCACTCGAGACTCTTCTCGATGCCAATGCTCATCCTGTAAACAGTAAAGGTTTCTTCCACTCACCATTCTTCCGATCGCCGACTGCAAGTACAAGATATCGTGTATTTGTATCTGCAACTATGGTTGAAAAACCTTCTAGTTCGTCATCTACTCTTGTTGATCAGCCAGTTGTTCCAGGAGACGTGGTTCTCGACCTCTCGAACATGGCCAACGAGACAATCAAGCTTGGAGGCGGTCTTCGACAGGACCACGATGCTATTTCTGTCTCCAAAGTTGGAAAACTGAGGTTCTCTAAACCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGTACGTGCCATGTGCGGAAGATTGTGTTCTTGGAATCGTGCTTGACTCTAGAGCCGACAATTTTCTTGTTGACATAAAAGGTCCGTCATTGGCCTTTCTTCCTGTTCTTGCATTTGAAGGAGGAACTAGGCGAAACATACCCAAATTTGAGATGGGTGCCCTGCTTTATGTGCGGGTAGTGAAGGTGAACCCTGGTATGAATCCTGAGTTGGCATGTACTGATGCGAGTGGGAAAGCAGCTGGATTTGGCCTCCTAAAGGATGGTTACATGTTTGAGTGTTCAACTGGCTTATCAAGAATGCTTCTAAGCTCGCCCGCATGTCCAGTTCTTGAATCTCTTGGAAAGAAGCTTTCATTCGAGATAGCAGTTGGTTTAAATGGCCGAGTTTGGGTTAATTCCGATTCTCCGTCCACAACCATTGTTGTTTCAAATGCAATATTGAACTCCGAGACACTGTCTGGGGTGCAACAGAGAATCATGGTGGACAAACTCCTTAACAATTTAAAGCTGTCAAAAGGGGCTCCCATGGCGGCAACCCAATCTGCTCCTCCTTCTTCGAATGACGATAACTCCCAGAATTCAGCTCCAGCTCCAGCTCCTGCACGAGCTACGATCGAGGATCATGGAGATGCGAAGGCGGAGGTTGAGAAGCAAACCTCTCCACCATCGGTGTTTGTGAACTCTGAACCAATGAGAGAGGATCAAGTGCAAAATGCTGTGAAATTTCTTCAACACCCTAGAGTAAGAGGCTCTCCTGTTGTCTATAGACGATCGTTTTTAGAAAGAAAGGGTCTTACAAAGGAAGAGATTGATGAAGCATTCAGGCGTGTGCCCGACCCGCCTTCTAATGCTCAGACTGCTACTGTGAGTCAAGATGGACAGGTGAACACAGTTCAACCGCAACCCTCGACACAATCTCTTCAACCAGTTGCTGCTGCCACTCCTCTTGCTGGTGGTGAATCTCGTGTGGGTACTGTCGCACGGTCTAGATTCCATTGGTCACATGCCATTCTCGCAATAGGTGTACTGGCCGTTTCAGGTGCTGGAACAGTTGTAGTATTCAAGAATTCTATTATTCCTAGGTTAAAATCTTGGGTGCGTAAAGTTGTATTAGAAGATGATGACGTTGAGAAGAAAATAAATTTAAAACCAAGTGCAGCAGAGGAAGCAGCTGCTGCTGCCAAAGCAGCAGCAGCAGCAGCATCTGATGTGGCAAAGGCGAGCCAAGAGATGCTGTTTTCTAAAAATGAAGAGAAAAAGAAGTTTGAGGACTGTGTCGACTTGTTGAATGCTCAGCTTGGGCAGATGAAGTTGATGCTGAAGGCCATTCAGAATTTGGAAGCAACCACGTATGGAAGAACTACTACCGTTGATCAAGAAGATTATCGAATTACTCCCATGAGTTCAAAGCAGCCATATTCCAATGGCAAGTTGGACCTTAGCTTCCAGTCAGCTACACCTGCCACACCTGTTGAACCCTCCGTTGCACCGCATCCCAAGTCTTACATGGAGATCATGGCCATGGTCCAGAGAGGAGAAAAGCCATCTAATATTAGAGACATAGACGATTTACCTCCCAACCCAAATCAACAGCCATCAAATCCTCGCCTAGCTCCTAGAGCCAAGCCTTGGGAGGTTGGTACGCAAAACAATCCTGCCTTTTTCCCTCAGTCTCAAGATGATGCTGGTTTGAATTCCTTGGTACAAAACAATGGTGTGACTTACGAGAATGATAACCCTTCAGTGCCTTGGTGGCAGAAGAGAAATGTTAATATTACTGAGATCGACAATAATGAGTTGAAAGTAGGCTCTTCCAATGGTCTCTCTGCTGAGAAACCAGTTCAACGTGCATGGGTTCCTCCTCAGCCACCACCTGTCGCATTGCCAGAAGCTGCGGAAGCCATCCGAAGGCCAAAACCAACTATCCAGAAAGAGCAGTTTACTGACGAACAGTTAGCAACACAACCAAATGTAACTGATGAGTTGCAGAAGGCCACAAAAATTTCTGAATCTGGGGGAGCAATCGATTATGAGAACTTGGGAGTGAACTCAAGTGAGATACAAGTGGAAGATAGCAGCTCTGGAGGACAATGA 4704 44.69 MCNKGSFSKQKKMRKSAVAIAAVAGGREVAILRSLLILNNCEMPGIVMDEINEERAVNKHNGSSIHMEESYGNKSPRSGLSVQSHGSVHVDFPVDGLVDTSIEKLYENVCDMQSSDQSPSRRSFGSDGEESRIDSELNHLVGGEMREVEIIKEEEDIVEKPEHDFPSDSMNQSPSADKKEKAENTQPGSSKRLSSGKKAPHLQLDHETSPKSSPRGKGLLDKPPISRKNEKNLKKNSPVAAQLKKQKDSPLRGSKMQNGIEDFDESMMDNPDLGPYLLKQARNLVSSGENLQKALLIALRAAKSFELSANGKPNLELVMCLHVTAAIYCSLGQYSEAIPLLEHSIEIPSIKEGHEHALAKFAGHMQLGDTYAMLGQLENSLVCYTTGLEVQKQVLGEADPRVGETYRYLAEAHVQALRFDEAEKFCQMALDIHKKNVGPASLEEAADRRLMGLICETKGDHEAALEHLVLASMAMVANGQETDVAAVDCSIGDSYLSLSRYDEAVFAYQKALTVFKTTKGENHPAVGSVYVRLADLYNKTGKMRESVSYCENALRIYEKPVPGIPPEEIASGLTDIAAIYESMNDVEQAVKLLHRALKIYNDAPGQQNTIAGIEAQMGVLYYMLGNYSESYASFNNAIPKLRNSGEKKSAFFGIALNQMGLVCVQKYAINEAVELFEEAKSILEQEYGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEYVVGMREEKLGTANPDVDDEKRRLSELLKEAGRVRSRKARSLETLLDANAHPVNSKGFFHSPFFRSPTASTRYRVFVSATMVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPACPVLESLGKKLSFEIAVGLNGRVWVNSDSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLKLSKGAPMAATQSAPPSSNDDNSQNSAPAPAPARATIEDHGDAKAEVEKQTSPPSVFVNSEPMREDQVQNAVKFLQHPRVRGSPVVYRRSFLERKGLTKEEIDEAFRRVPDPPSNAQTATVSQDGQVNTVQPQPSTQSLQPVAAATPLAGGESRVGTVARSRFHWSHAILAIGVLAVSGAGTVVVFKNSIIPRLKSWVRKVVLEDDDVEKKINLKPSAAEEAAAAAKAAAAAASDVAKASQEMLFSKNEEKKKFEDCVDLLNAQLGQMKLMLKAIQNLEATTYGRTTTVDQEDYRITPMSSKQPYSNGKLDLSFQSATPATPVEPSVAPHPKSYMEIMAMVQRGEKPSNIRDIDDLPPNPNQQPSNPRLAPRAKPWEVGTQNNPAFFPQSQDDAGLNSLVQNNGVTYENDNPSVPWWQKRNVNITEIDNNELKVGSSNGLSAEKPVQRAWVPPQPPPVALPEAAEAIRRPKPTIQKEQFTDEQLATQPNVTDELQKATKISESGGAIDYENLGVNSSEIQVEDSSSGGQ 1567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33251088 33265772 + CrPI670011_06g025640.1 Cre06g2564 502026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2564 1567 MobiDBLite consensus disorder prediction 123 166 - -
Cre06g2564 1567 Gene3D - 877 953 IPR012340 -
Cre06g2564 1567 FunFam Exosome complex exonuclease RRP40 807 872 - -
Cre06g2564 1567 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 957 1039 IPR036612 GO:0003723(InterPro)
Cre06g2564 1567 Pfam Family of unknown function (DUF5572) 1367 1415 - -
Cre06g2564 1567 Gene3D K Homology domain, type 1 954 1037 IPR036612 GO:0003723(InterPro)
Cre06g2564 1567 MobiDBLite consensus disorder prediction 1151 1179 - -
Cre06g2564 1567 SUPERFAMILY Nucleic acid-binding proteins 869 961 IPR012340 -
Cre06g2564 1567 Pfam Exosome complex component RRP40, S1 domain 871 953 - -
Cre06g2564 1567 Coils Coil 736 756 - -
Cre06g2564 1567 MobiDBLite consensus disorder prediction 65 84 - -
Cre06g2564 1567 Gene3D Tetratricopeptide repeat domain 251 470 IPR011990 GO:0005515(InterPro)
Cre06g2564 1567 MobiDBLite consensus disorder prediction 1048 1068 - -
Cre06g2564 1567 Pfam Peroxisomal membrane protein PEX14-like, central 1199 1317 IPR054154 -
Cre06g2564 1567 MobiDBLite consensus disorder prediction 1045 1100 - -
Cre06g2564 1567 CDD S1_Rrp40 870 955 IPR037319 GO:0003723(InterPro)
Cre06g2564 1567 ProSiteProfiles TPR repeat profile. 485 518 IPR019734 GO:0005515(InterPro)
Cre06g2564 1567 Pfam Pex14 N-terminal domain 1102 1146 IPR006785 -
Cre06g2564 1567 SUPERFAMILY TPR-like 488 722 IPR011990 GO:0005515(InterPro)
Cre06g2564 1567 ProSiteProfiles TPR repeat profile. 570 603 IPR019734 GO:0005515(InterPro)
Cre06g2564 1567 SUPERFAMILY Ribosomal L27 protein-like 808 869 - -
Cre06g2564 1567 SMART tpr_5 361 394 IPR019734 GO:0005515(InterPro)
Cre06g2564 1567 SMART tpr_5 485 518 IPR019734 GO:0005515(InterPro)
Cre06g2564 1567 SMART tpr_5 318 351 IPR019734 GO:0005515(InterPro)
Cre06g2564 1567 SMART tpr_5 527 560 IPR019734 GO:0005515(InterPro)
Cre06g2564 1567 SMART tpr_5 611 644 IPR019734 GO:0005515(InterPro)
Cre06g2564 1567 SMART tpr_5 695 728 IPR019734 GO:0005515(InterPro)
Cre06g2564 1567 SMART tpr_5 570 603 IPR019734 GO:0005515(InterPro)
Cre06g2564 1567 SMART tpr_5 653 686 IPR019734 GO:0005515(InterPro)
Cre06g2564 1567 SMART tpr_5 403 436 IPR019734 GO:0005515(InterPro)
Cre06g2564 1567 FunFam Exosome complex component RRP40 873 953 - -
Cre06g2564 1567 Gene3D Tetratricopeptide repeat domain 471 652 IPR011990 GO:0005515(InterPro)
Cre06g2564 1567 Gene3D - 1094 1160 IPR036388 -
Cre06g2564 1567 FunFam Peroxisomal membrane protein PEX14 1094 1156 - -
Cre06g2564 1567 MobiDBLite consensus disorder prediction 110 257 - -
Cre06g2564 1567 Pfam KH domain 958 1006 IPR004088 GO:0003723(InterPro)
Cre06g2564 1567 CDD KH-I_Rrp40 957 1035 IPR049469 -
Cre06g2564 1567 MobiDBLite consensus disorder prediction 1386 1411 - -
Cre06g2564 1567 MobiDBLite consensus disorder prediction 198 212 - -
Cre06g2564 1567 FunFam exosome complex component RRP40 954 1037 - -
Cre06g2564 1567 MobiDBLite consensus disorder prediction 1146 1179 - -
Cre06g2564 1567 Gene3D Tetratricopeptide repeat domain 665 767 IPR011990 GO:0005515(InterPro)
Cre06g2564 1567 Gene3D - 806 872 - -
Cre06g2564 1567 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 43 774 - -
Cre06g2564 1567 SUPERFAMILY TPR-like 271 602 IPR011990 GO:0005515(InterPro)
Cre06g2564 1567 Pfam Tetratricopeptide repeat 655 721 - -
Cre06g2564 1567 Pfam Tetratricopeptide repeat 418 468 - -
Cre06g2564 1567 Pfam Tetratricopeptide repeat 483 559 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2564 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2564 Cre-Chr6:33251088 Cre07g1498 Cre-Chr7:30208368 1.10E-196 dispersed
Cre06g2564 Cre-Chr6:33251088 Cre01g1270 Cre-Chr1:25948455 7.10E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g740 . . Bda06g00593 . . . Bma06g00233 . . . Cma10g00126 Cma11g00097 Car10g00117 Car11g00097 . . Cpe04g01552 Bhi02g00439 Tan09g2242 . . Hepe09g0198 . . Cla06g01660 Cam06g1845 Cec06g1896 Cco06g1901 Clacu06g1804 Cmu06g1745 Cre06g2564 Cone2ag0905 Cone16ag0107 . . . . . . . Blo15g00269 Bda11g01660 . Bpe07g00835 . . . . Cmo10g00132 Cmo11g00097 . . . . . Cpe18g00843 . . . . . . . . . . . . . . Lsi06g01550 Csa01g00154 Chy02g02576 Cme02g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003461 3 3 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 2 2 48