Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2572 ATGGAACAGGAAACGCAAGGGTCCAAACGGGAAGAAGAAATGTGGGAGTGCTCGGATGAAAGAGAAAACGCAAGGTTGGAGTGCTCGGATGAAAGAGGAAACGCAAGGTTGGAGTGCTCGGATGAAAGAGGAAACGCAAGGTCACGGGCGACGGCAGCCACAGCGGCGGCAGGGAATCTCTGCGACGACGCGACGGGACCTGTGGAGGACGGAATCTCTATGGCTCACAGTCACAGTACCAGTACCACAGCCTACGGCCTACCCCTCTCTCTCTCTACGCCCCTAAATAATTCTTCCATTTTTCTCTCTCCGCTGTCGACCATGGCGGATCTTTACGGACTCCATCCCCTCGCTGATAACTCTTACCAGTTATCTTCAGCGACGACGTTGGGTAGCTTTCCTCTTCTTGCTAATTCTCCAATGGCTTCTGCAGATTATTCTCATCTGCTTCCTGCTTTTGAATCGGAATATTTGCGGTCGGTTTCGTCGGCCGCCTGCGACACCGTTGCGGCGGCGGCTGAGATTGAAACAGCGCGAGCTAATTCCGAGTACTCCGCCGGTGTAATTCGAGCGAAAATTGCTTCTCATCCTCTTTACCCTAAACTCGTCGATGCGTTCGTGAACTGCCAAAAGGTCGGTGTACCGCCGGAGTTCGCTGATATTCTAGACCAAAACAACCGTGGAAGTGATATCGGCGAAGAAACATCCGGCGTTTCAAATTGCTTGGGTGTCGATTCCAAACTCGATGAGTTCATGGAAACATACTACAGGATACTAGCCAAATACGAGTTAGATCTCTCCCAGTCCTTCATGGAAGCATCTTCCTTTCTCAACAACATGGGAATGCAGTTAAACGTGCTTTGCAATAACGATGAAACTGCTCCGAAAGAGAATATAAGCGCCGGAGAAGTAGAATTACAAGACTCTCTTGTGGTTCTGGGAAATGAAGATCGCGAGCTGAAGGATCGACTTTTGCGGGAGTACGGTGGTCATATTAGTAGCTTAAAGCAGGAATTCTCAAAAACTAAAAAGAAGGCAAATCTGCCGAGAGAAGCCAGACAGATCCTGCTTCACTGGTGGAACAGCCATTCCCAGTGGCCATATCCCACTTGTAATGAGAATGTTTATAGCCTTTACCTTAAATTGTACGAGCCACTCTTGATTGTAACGAACCCTCTGGTATGGTCAGGCATCGACGTTGATATGATTGTAGGAAACGATTCATTATGCGCTCCTCTTGAATGGAAGTTCTCTCAGGTCTTCGGTGAACGAGTTGCCGGAGAGGATATTCAGGATGTTGATATCATATCAGCGATTGGATTCGATAAGACTGGTGACAACCTTGCCATTGGGGACCGAGGTGGTCGTGTTATTATATTTGAGAGAAGGGACGGGAAGGATACTTCAAAAAACTACCCTACACGGAATAAGTTGGAGCAGTTGAATCTTACTCCCGCATGTCATCCTGAATACCAATACAAGACTGAATTTCAGAGTCATGAACCTGAGTTTGATTACTTGAAGAGTTTGGAAATCGAAGAGAAGATTAATAAAATAAAGTGGTGTGTGTCACCCAATGGATCTCGCTTCATCCTTTCAACAAATGAAAAGACTATTAAATTATGGAAGGTTAAGGAGCATAAGGTGAAAACTGTTAAAGAGATGAACCCCAATCGATTTGTGAGTTCAGAGAATGCACTTTTGGCGGGAATCAGTTTCACTAGTGAACAAGACAAAGTATCTCTTTCCAATGGTTGCCATTGGAATTTGTCAGAGAATATGGCAACGAACAAGGTAGCCTCTAAAGACATTCATTACATGATTGCTGATCAAGACAACACTTCTCGGAGAAGATGCCGAAAGGTGTATGCTCATGCTCACGATTATAATATTAACTCCATTTCTAACAATAGTGATGGTGAGACATTTATTTCTGCAGACGACTTGCGAATAAACTTATGGAACCTTGAGATTAGTAATCAGTGTTTCAATATCATTGACATGAAGCCTTCAAACATGGAAGATCTTACAGAGATCATAACGTCGGCTGAATTCCATCCTCTGCATTGTAATCTTCTTGCGTACAGCAGCTCAAGGGGTTTTATTCGTCTAGTGGACATGCGCCAGTCTGCATTATGTGATGATAGTGCAATTCTGTTACGAACTGAAGAACCGAATCAACCAAAATCATTTTTTGCGGAGTTAATTTCATCCATTTCGGATATAAAATTTTCAAGTGATGGACGGTTTATCATTAGCCGGGATTACATGAATTTAAAGCTTTGGGATATCCACAAGTGCTCTTCCCCGGTTGCAGTTTTCAAGATCCACGAGCACCTGCGACCTAGGTTGTGTGAGCTGTATGATAACGATTCCATATTTGATAGATTTGAATGTTGCCTCAGTGCAGACGGGCTTCACTTTGCAACTGGAACTTATAGCAACCAATTACGGATGTTCTCTTATGGCTCTGGAAGTTCAGAAGGGATCACTACAGAAGTGGGAAAGATTCCTGATAGGAAGCCACATCTCCAAACCACTCGGCGGGCGAGAAGATCGTCCTTAAGCAATTTGACACGTGATTTTTTTCGGCATGGCAATGAACATTCAAACTCGGACAATAACGAAACTTCTGTTGACCTGAACTCCAAGTTACTACATTCAGCGTGGCACCCATCCGAAAATTTAATCGCATGTGCTGCTGGAAGTGGTTTGTTCATCCATTATGCATAA 2733 44.57 MEQETQGSKREEEMWECSDERENARLECSDERGNARLECSDERGNARSRATAATAAAGNLCDDATGPVEDGISMAHSHSTSTTAYGLPLSLSTPLNNSSIFLSPLSTMADLYGLHPLADNSYQLSSATTLGSFPLLANSPMASADYSHLLPAFESEYLRSVSSAACDTVAAAAEIETARANSEYSAGVIRAKIASHPLYPKLVDAFVNCQKVGVPPEFADILDQNNRGSDIGEETSGVSNCLGVDSKLDEFMETYYRILAKYELDLSQSFMEASSFLNNMGMQLNVLCNNDETAPKENISAGEVELQDSLVVLGNEDRELKDRLLREYGGHISSLKQEFSKTKKKANLPREARQILLHWWNSHSQWPYPTCNENVYSLYLKLYEPLLIVTNPLVWSGIDVDMIVGNDSLCAPLEWKFSQVFGERVAGEDIQDVDIISAIGFDKTGDNLAIGDRGGRVIIFERRDGKDTSKNYPTRNKLEQLNLTPACHPEYQYKTEFQSHEPEFDYLKSLEIEEKINKIKWCVSPNGSRFILSTNEKTIKLWKVKEHKVKTVKEMNPNRFVSSENALLAGISFTSEQDKVSLSNGCHWNLSENMATNKVASKDIHYMIADQDNTSRRRCRKVYAHAHDYNINSISNNSDGETFISADDLRINLWNLEISNQCFNIIDMKPSNMEDLTEIITSAEFHPLHCNLLAYSSSRGFIRLVDMRQSALCDDSAILLRTEEPNQPKSFFAELISSISDIKFSSDGRFIISRDYMNLKLWDIHKCSSPVAVFKIHEHLRPRLCELYDNDSIFDRFECCLSADGLHFATGTYSNQLRMFSYGSGSSEGITTEVGKIPDRKPHLQTTRRARRSSLSNLTRDFFRHGNEHSNSDNNETSVDLNSKLLHSAWHPSENLIACAAGSGLFIHYA 910
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33393137 33409748 + CrPI670011_06g025720.1 Cre06g2572 502034

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2572 910 SMART KNOX2_2 238 289 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre06g2572 910 Pfam KNOX1 domain 189 227 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre06g2572 910 Pfam ELK domain 319 340 IPR005539 GO:0003677(InterPro)
Cre06g2572 910 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 503 517 IPR018067 -
Cre06g2572 910 Gene3D - 712 905 IPR015943 GO:0005515(InterPro)
Cre06g2572 910 Gene3D - 467 711 IPR015943 GO:0005515(InterPro)
Cre06g2572 910 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 431 595 - -
Cre06g2572 910 SUPERFAMILY WD40 repeat-like 429 905 IPR036322 GO:0005515(InterPro)
Cre06g2572 910 SMART ELK_2 319 340 IPR005539 GO:0003677(InterPro)
Cre06g2572 910 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 794 820 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cre06g2572 910 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 683 711 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cre06g2572 910 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 712 739 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cre06g2572 910 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 879 908 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cre06g2572 910 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 627 654 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cre06g2572 910 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 440 460 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cre06g2572 910 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 519 547 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cre06g2572 910 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 655 682 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cre06g2572 910 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 740 767 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cre06g2572 910 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 768 793 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cre06g2572 910 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 413 909 IPR000009 GO:0000159(PANTHER)|GO:0000159(InterPro)|GO:0005829(PANTHER)|GO:0019888(PANTHER)|GO:0019888(InterPro)
Cre06g2572 910 SMART WD40_4 790 821 IPR001680 GO:0005515(InterPro)
Cre06g2572 910 SMART WD40_4 616 655 IPR001680 GO:0005515(InterPro)
Cre06g2572 910 SMART WD40_4 426 461 IPR001680 GO:0005515(InterPro)
Cre06g2572 910 SMART WD40_4 659 706 IPR001680 GO:0005515(InterPro)
Cre06g2572 910 SMART WD40_4 725 763 IPR001680 GO:0005515(InterPro)
Cre06g2572 910 SMART WD40_4 503 543 IPR001680 GO:0005515(InterPro)
Cre06g2572 910 SMART KNOX1_2 187 231 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre06g2572 910 Pfam WD domain, G-beta repeat 620 655 IPR001680 GO:0005515(InterPro)
Cre06g2572 910 ProSiteProfiles ELK domain profile. 319 339 IPR005539 GO:0003677(InterPro)
Cre06g2572 910 Gene3D - 327 376 - -
Cre06g2572 910 Pfam KNOX2 domain 242 288 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2572 K04354 - - csv:101206601 937.562
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2572 Cre-Chr6:33393137 Cre07g1721 Cre-Chr7:32660245 2.70E-166 dispersed
Cre05g2714 Cre-Chr5:38032045 Cre06g2572 Cre-Chr6:33393137 1.40E-54 wgd
Cre06g2572 Cre-Chr6:33393137 Cre08g1722 Cre-Chr8:29493313 2.10E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g775 . . . . . . . Bma12g01043 . . . Cma11g00090 . Car11g00081 Sed08g0112 . Cpe04g01565 Bhi02g00459 Tan09g2259 Cmetu02g0570 . Hepe09g0209 . . Cla06g01669 Cam06g1857 Cec06g1905 Cco06g1911 Clacu06g1813 Cmu06g1754 Cre06g2572 . . . . . . . . . Blo15g00263 . . Bpe07g00846 . . . . . Cmo11g00089 . . . . . . . . . . . . . . . . . . . . . Csa01g00142 Chy02g02586 Cme02g01984
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007287 0 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 36