Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2580 ATGACTGAACCAACAGGTTCATCGGCTTCAGATAAGGGCCACGAACCCTCTTCTTCATCGGACCAGAAAAGTACTAAACGGGATTTTTCCACTGCAATTTTGGAACGCAAGAAGTCTCCAAATCGTTTAGTTGTTGATGAGGCTATAAATGACGATAACTCTGTGGTTTCTTTGCATCCTGCTACCATGGAAAAGCTACAGTTCTTTAGAGGAGATACTATTTTATTAAAGGGAAAGAAGCGGAGAGATACGGTGTGTATTGTACTTGCTGATGAACAATGCGAAGAGTCAAAAATCAGAATGAATAAAATTGTACGAGCCAATCTCAGAGTTCGTCTTGGAGATGTTGTATCTGTCCATCAGTGTCCTGATGTGAAGTATGGAAAGCGGATTCATGTCCTCCCTGTTGATGATACAATTGAGGGTGTTACGGGCAACCTATTTGATGCATATTTGAAACCTTATTTCTTGGAAGCATATCGACCGGTAAGGAAGGGTGACCTGTTCTTAGTCCGGGGTGGAATGAGAAGTGTTGAGTTCAAGGTCATAGAAACAGACCCTGGTGAATACTGTGTTGTTGCACCTGATACCGAGATTTACTGTGAGGGAGAGCCCATCAAACGTGAGGATGAGGAGAGATTAAATGAAGTTGGATATGATGATGTTGGAGGTGTCAGGAAGCAAATGGCTCAGATTCGTGAATTAGTGGAATTACCACTTAGACACCCACAACTCTTCAAATCAATTGGTGTAAAGCCTCCAAAAGGAATATTGCTATATGGGCCTCCTGGATCTGGAAAGACTCTTATAGCAAGAGCTGTTGCTAATGAGACAGGTGCATTCTTCTTTCTGATTAATGGGCCAGAAATAATGTCAAAGTTAGCTGGTGAGAGTGAAAGTAATCTGAGGAAGGCATTTGAGGAAGCTGAAAAGAATGCCCCCTCAATTATATTTATTGATGAGCTTGATTCCATTGCACCAAAGAGGGAGAAAACACATGGAGAAGTGGAAAGGCGTATCGTGTCCCAACTTCTTACCTTGATGGATGGCCTCAAGACTCGAGCACATGTTATTGTTATTGGAGCAACTAATAGACCCAACAGCATTGACCCTGCTTTGAGGAGATTTGGAAGATTTGATCGGGAGATTGATATTGGTGTACCAGATGAAGTAGGACGATTGGAAGTCCTTAGGATCCATACAAAGAACATGAAACTTGCAGAGGATGTTGATCTTGAGCGAGTTGCAAGGGATACCCATGGTTATGTTGGTGCCGATCTTGCCGCTCTTTGTACTGAAGCAGCACTCCAGTGTATTCGGGAGAAAATGGATGTCATCGACTTGGAAGATGAAACAATAGATGCTGAGGTTTTGAATTCCATGGCTGTAACCAATGAACATTTCCAAACTGCTTTAGGGTCTTCTAATCCGTCGGCCTTGCGGGAAACTGTTGTGGAGGTTCCAAACGTGTCATGGGATGATATTGGAGGGTTGGAAAATGTTAAAAGAGAGCTCCAGGAGACTGTCCAATACCCAGTGGAGCATCCTGAGAAGTTTGAAAAATTTGGCATGTCACCATCTAAAGGTGTTCTCTTTTATGGTCCCCCTGGCTGTGGTAAGACGCTACTTGCTAAGGCAATTGCCAACGAATGCCAGGCCAACTTTATAAGTGTGAAAGGACCTGAGTTGCTGACGATGTGGTTTGGTGAAAGTGAGGCAAATGTGAGAGAGATATTTGACAAGGCTCGTCAGTCGGCTCCTTGTGTACTATTTTTCGATGAACTCGATTCTATAGCAACTCAGCGCGGTAGTTCTGTTGGAGATGCTGGTGGTGCAGCAGATAGAGTCTTGAACCAACTTCTTACAGAAATGGATGGCATGACTGCAAAGAAGACTGTGTTTATAATTGGGGCAACAAACAGGCCAGACATTATAGACCCCGCACTGCTGAGGCCAGGACGTCTGGACCAATTAATATACATCCCACTCCCTGACGAGTCTTCTCGTCTTCAAATTTTCAAAGCATGTCTGCGAAAGTCGCCAGTGGGAAAAGATGTCAATCTATCAGCTCTTGCACGGTACACCCATGGCTTTAGTGGAGCTGATATCACTGAAATATGTCAGCGTGCCTGCAAATATGCCATTAGAGAAAATATTGAGAAGGATCTCGAAAGGGAGAGAAAGCAAAATGAAAACTCGGAAGCCATGGAAGAAGACGACATCGATGAAGTCTCGGAGATAAAGGCAGCACATTTTGAGGAGTCAATGAAGTATGCTCGCCGAAGTGTCAGCGATGCAGACATCAGGAAATACCAGCTCTTTGCTCAGACCCTACAGCAATCTCGTGGGATTGGTTCCGAGTTTCGGTTCCCTGATCGAACCGACAATGTAGCATCAGGAGCTGCCGACCCATTTGCTTCCACCATGGCTGCTGGAGATGATGATGATCTTTACAGCTGA 2460 44.31 MTEPTGSSASDKGHEPSSSSDQKSTKRDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQFFRGDTILLKGKKRRDTVCIVLADEQCEESKIRMNKIVRANLRVRLGDVVSVHQCPDVKYGKRIHVLPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIYCEGEPIKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKTRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGSSNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDESSRLQIFKACLRKSPVGKDVNLSALARYTHGFSGADITEICQRACKYAIRENIEKDLERERKQNENSEAMEEDDIDEVSEIKAAHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGIGSEFRFPDRTDNVASGAADPFASTMAAGDDDDLYS 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33492089 33497111 + CrPI670011_06g025800.1 Cre06g2580 502042

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2580 819 Gene3D - 222 386 IPR027417 -
Cre06g2580 819 Gene3D - 480 663 IPR027417 -
Cre06g2580 819 Pfam ATPase family associated with various cellular activities (AAA) 530 663 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre06g2580 819 Pfam ATPase family associated with various cellular activities (AAA) 257 386 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre06g2580 819 ProSitePatterns AAA-protein family signature. 357 375 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre06g2580 819 FunFam Transitional endoplasmic reticulum ATPase 218 386 - -
Cre06g2580 819 SUPERFAMILY ADC-like 38 122 IPR009010 -
Cre06g2580 819 FunFam Transitional endoplasmic reticulum ATPase 480 663 - -
Cre06g2580 819 SUPERFAMILY Cdc48 domain 2-like 124 216 IPR029067 -
Cre06g2580 819 MobiDBLite consensus disorder prediction 1 15 - -
Cre06g2580 819 NCBIfam CDC48 family AAA ATPase 43 779 IPR005938 GO:0016787(InterPro)
Cre06g2580 819 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 488 776 IPR027417 -
Cre06g2580 819 FunFam Cell division control 48 125 221 - -
Cre06g2580 819 FunFam Transitional endoplasmic reticulum ATPase 19 124 - -
Cre06g2580 819 Pfam AAA+ lid domain 685 721 IPR041569 -
Cre06g2580 819 Pfam AAA+ lid domain 409 450 IPR041569 -
Cre06g2580 819 MobiDBLite consensus disorder prediction 16 32 - -
Cre06g2580 819 Gene3D - 388 479 - -
Cre06g2580 819 Gene3D - 125 221 - -
Cre06g2580 819 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 478 IPR027417 -
Cre06g2580 819 SMART CDC48_N_2 42 125 IPR003338 -
Cre06g2580 819 FunFam Cell division control 48 388 479 - -
Cre06g2580 819 CDD RecA-like_CDC48_r1-like 221 386 - -
Cre06g2580 819 SMART CDC48_2_2 142 208 IPR004201 -
Cre06g2580 819 PANTHER AAA-FAMILY ATPASE 20 775 IPR050168 GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0016887(PANTHER)|GO:0030433(PANTHER)|GO:0030970(PANTHER)|GO:0031593(PANTHER)|GO:0034098(PANTHER)|GO:0051228(PANTHER)|GO:0071712(PANTHER)|GO:0097352(PANTHER)
Cre06g2580 819 Pfam Cell division protein 48 (CDC48), N-terminal domain 42 123 IPR003338 -
Cre06g2580 819 CDD RecA-like_CDC48_r2-like 501 661 - -
Cre06g2580 819 ProSitePatterns AAA-protein family signature. 633 651 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre06g2580 819 SMART AAA_5 526 665 IPR003593 GO:0016887(InterPro)
Cre06g2580 819 SMART AAA_5 253 389 IPR003593 GO:0016887(InterPro)
Cre06g2580 819 Coils Coil 716 736 - -
Cre06g2580 819 Gene3D - 667 775 - -
Cre06g2580 819 Gene3D - 19 124 - -
Cre06g2580 819 MobiDBLite consensus disorder prediction 1 32 - -
Cre06g2580 819 MobiDBLite consensus disorder prediction 785 819 - -
Cre06g2580 819 Pfam Cell division protein 48 (CDC48), domain 2 143 207 IPR004201 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2580 K13525 - - csv:101205889 1579.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0963 Cre-Chr1:14760073 Cre06g2580 Cre-Chr6:33492089 3.60E-43 dispersed
Cre06g2580 Cre-Chr6:33492089 Cre10g2132 Cre-Chr10:35913000 0.00E+00 dispersed
Cre06g2580 Cre-Chr6:33492089 Cre04g1016 Cre-Chr4:28772044 0.00E+00 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g791 . . . . . . . . . . . Cma11g00084 . Car11g00077 . . Cpe04g01568 Bhi02g00487 . . . . . . Cla06g01678 Cam06g1866 . Cco06g1920 Clacu06g1821 Cmu06g1763 Cre06g2580 . . Cone13ag0155 . . . . . . . . . . . . . . . Cmo11g00085 . . . . . . . . . . . . . . . . . . . . Lsi06g01567 Csa01g00131 Chy02g02596 Cme02g01992
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000638 2 4 4 4 4 3 5 3 3 3 3 2 5 3 3 5 3 3 5 3 3 3 3 3 3 3 3 3 2 3 99