Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2588 ATGGTGGATTCGATAGGGTTGTGTCAGCCTAGCCTAGTTGAAATGTACAGGGTTTTGCTTCACTCTTCTTCATCAGATCAGCTCTTAAACCAAACCTCAAAAATTTTTAGTTTATCAAAAGGAAAGGAAGAAAAGGGGTTTAAAGCTTTCTTACTTGAAAGGGCAAGGATGGCATCATCAAGTTCTTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCTGGTTGCATTTTTGCTCCTTATTTCCCACCGGAAGAGCCTCAAAAGTTTGCCAATGTGCACAAAATCTTTGGGGCCAGCAATGTCACAAAGCTACTAAATGAGCTTCTACCTCACCAAAGAGAGGATGCTGTGAACTCTCTTGCCTATGAGGCTGAGGCCCGAGTTCGGGACCCGGTCTACGGTTGCGTCGGAGCCATCTCCTTCCTCCAAAGGCAAGTTCAAAGGCTCCAAAAGGAACTCGACGCTGCGAATGCTGACCTAATTCGGTTCGCATGCAACGAGATACCTAATGCAGGAGTGAGTCAAGTGGTTCAGCCCAACCTTGGCGCTCGCCCGAGAGCGTTAGATCAATATCACACAAGTTCATCAACAAGTGGATATTATAATCAACATCTTCCTGCTTTTCCCATGGCTTATCCATTGCCTTGGAATGAAAACTCTTCTGGAAATAACATCAATGAAGGAGGAGGAGATGGCAATATTTGA 723 44.95 MVDSIGLCQPSLVEMYRVLLHSSSSDQLLNQTSKIFSLSKGKEEKGFKAFLLERARMASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNAGVSQVVQPNLGARPRALDQYHTSSSTSGYYNQHLPAFPMAYPLPWNENSSGNNINEGGGDGNI 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33590516 33593548 - CrPI670011_06g025880.1 Cre06g2588 502050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2588 240 Pfam Lateral organ boundaries (LOB) domain 66 163 IPR004883 -
Cre06g2588 240 Coils Coil 145 172 - -
Cre06g2588 240 ProSiteProfiles LOB domain profile. 65 166 IPR004883 -
Cre06g2588 240 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 64 184 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2588 Cre-Chr6:33590516 Cre09g1636 Cre-Chr9:33675716 6.80E-37 dispersed
Cre11g1551 Cre-Chr11:24820525 Cre06g2588 Cre-Chr6:33590516 5.60E-46 transposed
Cre01g1243 Cre-Chr1:25632238 Cre06g2588 Cre-Chr6:33590516 1.90E-51 wgd
Cre01g0532 Cre-Chr1:4618826 Cre06g2588 Cre-Chr6:33590516 3.90E-52 wgd
Cre10g1536 Cre-Chr10:29334984 Cre06g2588 Cre-Chr6:33590516 4.00E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53958 PF03195 LOB 5.30E-42 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2588 - - - 0.0