Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2594 ATGAATCCTTATGACCATAGATACGCCGATCCCAATTCCTACCGCGAGCGCCGAAGTGACCTAGTGGGTTTACAGCCTGCTGCGCCACCGCCAATAGTAGGGCGTGAATCCTTGTACAAAGGCTATCAACCTCCTCCAGTTCCATACTATGGCCGAGAAAGAGGAGGCGGAGGTGCTTTACCTAATGCCGGAGGCTTCAATGCCTTCCCACGATTTCAACCTCCCGCAGGACCGTTTAATGTCGGCCGCGGTGGCAGCGGTTTCGGTAGCAGCGGTGGTGGGAGGAGGGTGTTTGATTCGGGGAGGGGCGGTAGAAGGACTGGTGGGAATATTGGTTCTGGAGGTGGACGTGGTGGAGGAACGGGATTTGACGGCCGTGGTGGTTCTTCAAGAGGGGATTTAGATAACATAGTCCTTCCGAGTCAGAATTTTGGGAATTTGGTCCCTTTTGAAAAGAATTTCTACACTGAGTGTCCTTCTGTGCGTGCAATGACGGAGTCTGAAGTTAAGATTTACAGAGAGAGGCGTGATATTAGGGTGGAAGGATACGATGTCCCAAGACCAATTCGGAGTTTTCAGGAGGCGAATTTTCCTGCTTACTGCCTTGATGTAATTGCGAAATTGGGATTTGTTGAGCCAACTCCAATTCAGGCTCAAGGATGGCCGATGGCCTTGAAAGGAAGAGATTTGATTGGCATTGCTGAGACTGGCTCTGGGAAGACTCTGGCCTATCTACTGCCAGCTTTAATACACATTAGTGCCCAGCCTCGTTTATCGCATGGTGAAGGTCCTATTGTGTTGGTGTTAGCACCCACCAGAGAATTAGCTGTTCAAATTCAACAAGAGGCTACTAAATTCGGGTTGCGTGCTAATATTAGAAGTACTTGCGTTTATGGTGGGGCTCCGAAGGGCCCTCAAATTCGTGATCTCAAAAATGGTGTTGAGATTGTTATTGCTACACCTGGCCGGCTCATAGATATGCTGGAAGCTGGTCACACAAACCTGCGGCGAGTGACTTACCTTGTTTTAGATGAAGCGGATAGAATGCTGGACATGGGATTTGAGCCTCAAATAAGGACAATCGTTAGCCAAATCCGACCTGATAGGCAGACATTATATTGGAGTGCCACATGGCCAAGGGAGGTTGAGAAATTGGCTAGACAATTTTTACGCAATGCATATAAGGTGATTATTGGTTCACCAGATCTTAAAGCTAACCAGTCTATAAACCAAGTCGTTGAAGTTTTGCCAGAGGCTGAGAAATATAGGAGGTTAATAAAATTGCTCGTTGAAGTGATGGATGGTAGTCGTATTCTGATTTTTGTGGAAACAAAAAAGGGATGTGATAAAGTAACGAGGCAATTGAGAATGGATGGATGGCCAGCTCTATCCATTCATGGCGATAAAAAGCAGGCTGAAAGGGACTTGGTCTTGTCAGAATTTAAGAGTGGAAGAAATCCCATAATGACAGCCACGGATGTGGCTGCAAGAGGGCTTGATGTGAAAGATATAAAATGTGTGATCAACTATGATTTCCCATCAAGCCTCGAGGACTACGTCCACAGGATAGGCCGAACAGGTCGTGCTGGTGCAAAGGGAACTGCATTCACATTCTTTACTCATGAGAATGTGAAACACGCCAGAGATCTTATAAAGATACTCCGAGAAGCAGGGCAGATTGTCACCCCTGCATTGTCTGCTTTAGCCTCGTCTAGTGGCTTTGGAGGTTCTGGCACTAAATTCCGCCCTCAAGGACACAGAGGCAGCTTTGGTAATCGATCAATGGTTTCGGGATCAAATGCAATCCCTCTTGGTTTGACGTCAAGGCCTCGCTAG 1836 47.28 MNPYDHRYADPNSYRERRSDLVGLQPAAPPPIVGRESLYKGYQPPPVPYYGRERGGGGALPNAGGFNAFPRFQPPAGPFNVGRGGSGFGSSGGGRRVFDSGRGGRRTGGNIGSGGGRGGGTGFDGRGGSSRGDLDNIVLPSQNFGNLVPFEKNFYTECPSVRAMTESEVKIYRERRDIRVEGYDVPRPIRSFQEANFPAYCLDVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALIHISAQPRLSHGEGPIVLVLAPTRELAVQIQQEATKFGLRANIRSTCVYGGAPKGPQIRDLKNGVEIVIATPGRLIDMLEAGHTNLRRVTYLVLDEADRMLDMGFEPQIRTIVSQIRPDRQTLYWSATWPREVEKLARQFLRNAYKVIIGSPDLKANQSINQVVEVLPEAEKYRRLIKLLVEVMDGSRILIFVETKKGCDKVTRQLRMDGWPALSIHGDKKQAERDLVLSEFKSGRNPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENVKHARDLIKILREAGQIVTPALSALASSSGFGGSGTKFRPQGHRGSFGNRSMVSGSNAIPLGLTSRPR 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33650322 33654294 - CrPI670011_06g025940.1 Cre06g2594 502056

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2594 611 FunFam probable ATP-dependent RNA helicase DDX17 152 399 - -
Cre06g2594 611 SMART helicmild6 449 530 IPR001650 -
Cre06g2594 611 FunFam ATP-dependent RNA helicase RhlB 400 573 - -
Cre06g2594 611 Pfam DEAD/DEAH box helicase 214 384 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cre06g2594 611 Pfam Helicase conserved C-terminal domain 420 530 IPR001650 -
Cre06g2594 611 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 342 350 IPR000629 -
Cre06g2594 611 Gene3D - 402 570 IPR027417 -
Cre06g2594 611 MobiDBLite consensus disorder prediction 1 41 - -
Cre06g2594 611 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 221 396 IPR014001 -
Cre06g2594 611 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 190 218 IPR014014 GO:0003724(InterPro)
Cre06g2594 611 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 424 569 IPR001650 -
Cre06g2594 611 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 176 558 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Cre06g2594 611 SMART ultradead3 209 412 IPR014001 -
Cre06g2594 611 MobiDBLite consensus disorder prediction 1 17 - -
Cre06g2594 611 CDD DEADc_DDX5_DDX17 202 396 - -
Cre06g2594 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 263 551 IPR027417 -
Cre06g2594 611 MobiDBLite consensus disorder prediction 79 134 - -
Cre06g2594 611 Gene3D - 154 400 IPR027417 -
Cre06g2594 611 MobiDBLite consensus disorder prediction 574 596 - -
Cre06g2594 611 CDD SF2_C_DEAD 409 539 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2594 K12823 - - csv:101203955 1038.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2594 Cre-Chr6:33650322 Cre07g1727 Cre-Chr7:32720645 3.10E-187 dispersed
Cre06g2594 Cre-Chr6:33650322 Cre01g1476 Cre-Chr1:27975393 2.00E-45 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g811 . . . . . . . . . . Cma10g00099 . Car10g00086 . . . . Bhi02g00510 . . . . . . Cla06g01693 Cam06g1881 Cec06g1928 Cco06g1933 Clacu06g1837 Cmu06g1779 Cre06g2594 Cone2ag0927 . . . . . . . . . . . Bpe07g00856 . . . . Cmo10g00101 . . . . . . Cpe18g00865 . . . . . . . . . . . . . . Lsi06g01588 . Chy02g02611 Cme02g02008
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011968 0 3 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29