Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2600 ATGGCCATGGATCCCAACCCCAAAAGTTTCCCGATCCTTTCTTACGTCATGGCCAGAATCCCCTCTCTCAGCCCTCCAACGCCGGCCACTGAATTCGACATCGAACAACCTGCATCTCCGGCCTCCCGCCGCGCTCCTTCCGATCCTTCCTCATCCTCCTCCCGAATCGTCCATGATATGCCTCATCTCTCCGACCCCAAGGTTTTGGCTTCTATGACTACCGCTATATCTGATGTTGCTCAGACCCGATCCGTCCTCAAAACCCTTGGGGAGAGACCAGACCATGAGGCTGTTGATACTGCCAAGGCTAAGCTCGCTGAGGTAGAAGTTAATTTGTCTGCCAAGCTTCAGGAAATCGTGCTTTCGGCTAGGCCGGCGGATGTCGAGTTGCTTGAGTGGAGGGCGCATCTTGCTGAGAAAGAGAACGAGTGCCGCCAGGCGGCGGATAAAGAGAAGCAGGGGTATAAGGCAATTGTGCAACTGGATGAGATGCACGAGGCGTATGAGAAGATGTTGAAGGAAGCAGAGGAGAGGTTGGTGAAGATTTACGAGTCGGCTGAGAGAGGGCTGCAGGAGGAAGAACACTTGGATCCAGTTAGCGAGGAGGTCAATGAGGAGGTTGCGAGGATTCTTCAGGACGCGAATGAGAAGGAAATGGATCGAATTAGTCTCTCCGGCCGACGCTTGCGGTTCTTGCCTGAAGGATTTGGACGCATTCGGGGATTGGTTGTGCTTGATATCTCCAGCAATCAACTACAGATTATCCCCGATTCAATATCTGGCTTAGAAAATCTTGAGGAGCTGAATGCCTCATCCAATCTCCTGGAGTCACTGCCCGACTCAATTGGGTTATTACAAAAGCTGAAACTCCTGAATGTCTCTGGGAACAAGTTGCATGCCCTTCCTGACACAATATGCCATTGCAGGTCTTTGGTGGAGTTGGATGTGAGCTTCAACAGTCTAACGTACTTGCCAACAAATATTGGCCATGAACTGGTGAATTTGGAGAAGCTTGCTATCCAGTTAAACAAGATACGCTCACTTCCCTCTTCTCTTTGTGGTATGAGCTCTTTGCGTTATCTGGATGCGCATTTCAACGAGCTTCATGGCCTTCCTCAGGCAATTGGGAAACTGACACAACTTGAGTATCTCAACCTAGGCAGTAATTTTACTGACCTTACTGAACTTCCACATACTTTTGGTGATTTATCCAGCCTTAAGGAACTTGATCTCAGCAATAACCAGATTCACGCTCTACCCGATACATTTGGTCATCTTGAGAATTTAAAGAAACTAAACTTGGAGCAAAATCCTCTTACAATTCCACCAATGGAAGTGGTTAACAAAGGACCGGATGCTGTGAGGACATTCATGTCCAAAAGATGGCTTGAAATTCTGGAAGAGGAAGATAGAAAAAGAACTCTTGAAATGGATGAACAGACGCAGACTGGATGGCTGACACGAAGCACCTCTTGGTTGAAGACTTACGTTTCTGGCGTTTCAGAGACGGTGTCTGGTATCGTTGGATCTCCCAAATCTCCAAGAGACCCTGTTTCTATTACTTACCATGCATTTCGCCCCGTATTGTACATTTCTCCTTACTATTTTCACGTCCAGTTTGATCTGGACAACTCTCTCATTCAGCAGATAAATGATGGAGATAAATTTCATTCCAAAATAGTTTCCTTTTCCCTTTTGATGATTAGATGGATTAGAACTTTCTTCTGCAGTGCCTTGGAGTTGGAGAGATACTTGATTTCATCAGAGTTTAGTGTTACACTACTGTTGCCGAGAAAGATGGATGAAAATGGCAGCAGGAAATTACATAATCTTGAAGCCCACTTGCTTTCAGAGTCCCAGAAGGATTTGAAGATTAGATTCAATGGAGAAAAATGGGAGGAAGTGATTACAGAGGTAAAGAAGCAGATGGGGCTGGCGGGTCCTTTGGTTTTGGTCAGTTTTTTGCAGTATAGTTTGCAGCTGATATCTATTATGTTCATTGGCCATCTTGGAGAGCTTCAACTTTCTGGTGCTTCAATGGCTTTCTCCTTTGCTGGAGTCACCGGCTTTAGTCTCTTGTTGGGAATGGGCAGTGCATTAGAGACATTATGTGGACAAGCATATGGAGGAAAACAATATGAGATGCTTGGGATTCATATGCAGAGAGCCATGGTTGTTCTTTCACTTATCTGCATTCCCATAGCCCTTTTGTGGGCTTCCATTGAACAAATCTTGACCATTCTTAAACAGGATCCTCTGATTTCCGAGCAAGCTGGGATTTATGGCAAATGGCTCATCCCCAGCATTATCCCCTATGGCCTCCTTCAGTGTCAATTTAGATTCTTACAGACTCAACATCTCACTTCTCCATTGTTGCTTTCCACTGCAGCTTCAAGTTCCATTCATCTTTTGGTTTGTTGGGGTTTGGTTTTTGGATTTGGATTTGGCATTAAAGGAGCTGCTTTCTCCACTGCCATCACTTATTGGATCAATGTCTTCATTTTGGCTTTCTATATCAAGTTCTCTCCTCATTGTCAAAAGACTTGGACTGGCTTCTCCATTCATGGAATCAAGAATTTGATTTCCTTCTTGGCTTTGGCAGTCCCTTCTTCTCTCATGGTTTGTTTGGAGTTCTGGTCGTACGAGTTTTTAGTTCTCATGTCAGGGCTTCTTCCCAATCCTGAGCTGGAAACGTCGATGCTATCAATCAGCTTGAGCACAAGTTCGCTGGTTTTCAGAATCGCCTATGGTTTCGGCAGTGCTGTGAGCACAAGAGTATCAAATGAGTTAGGGGCAGGAAAGGCATTGGCAGCTAAGCTAGCAGTGAAGGTAGTGGTGGTTTTGGGTTTAGCAGAAGGAATTGCATTAGGAATTTTACTAATTTCACTTAGAAACATATGGGGTTTTCTCTTCACAAATGAATTACAAGTTGTTCAATACTTGAGTGCAATAATGCCGATTCTCGCCATTTCTAACTTCATGGACGCCATCCAAGGCGTCCTTTCAGGGACCGCGAGAGGATGTGGATGGCAGAAGATAGGGGCATGGGTGAATCTTGGAGCTTATTACTTAGTTGGGTTGCCTTGTGCCATAACCTTCACTTTTGTGCTTCATTTTGGAGGGAAGGGACTATGGATGGGAATCACATGTGGAAGTTGTCTCCAATCCATATTGCTTTTGCTCGTTGCTTTTAACATTAATTGGGAGGACCAGGCAAGCAAAGCAAAGGAAAGAATGATAGGAATGTCGACACCGGCGACGGCGACGGCGACGTCGGCGATATTTGTGGTGCTTGCAGGTTTGTGTTTTGTCATTTTGAATTCCGATAATTTGATGGGGCGATGGCTACCAATTGTGGGGTTGTTGGCAGTCGCCGGAGTGGCGGTGGTGGCGGCCAGAGCCACCATGGTGGCGTGGATCACGGTGTTGGTGCTATTGGCGTTCGCCGGAAACCGACGGCGGGTTCTGGTCAAACAGGGGAGAAAGATCACCGCCGATGTAGCCATGTACTTAGCCGCCGTGATGGTTAAAGAAAGAGGGCTCATTGCTGTTGCTTTCGCCGCCGTCTTCAGCTTAGTCGCCGTCGTTCGTTCGACGGAGATCGATCTACTTTCTTTCTCTGTTTAA 3627 46.26 MAMDPNPKSFPILSYVMARIPSLSPPTPATEFDIEQPASPASRRAPSDPSSSSSRIVHDMPHLSDPKVLASMTTAISDVAQTRSVLKTLGERPDHEAVDTAKAKLAEVEVNLSAKLQEIVLSARPADVELLEWRAHLAEKENECRQAADKEKQGYKAIVQLDEMHEAYEKMLKEAEERLVKIYESAERGLQEEEHLDPVSEEVNEEVARILQDANEKEMDRISLSGRRLRFLPEGFGRIRGLVVLDISSNQLQIIPDSISGLENLEELNASSNLLESLPDSIGLLQKLKLLNVSGNKLHALPDTICHCRSLVELDVSFNSLTYLPTNIGHELVNLEKLAIQLNKIRSLPSSLCGMSSLRYLDAHFNELHGLPQAIGKLTQLEYLNLGSNFTDLTELPHTFGDLSSLKELDLSNNQIHALPDTFGHLENLKKLNLEQNPLTIPPMEVVNKGPDAVRTFMSKRWLEILEEEDRKRTLEMDEQTQTGWLTRSTSWLKTYVSGVSETVSGIVGSPKSPRDPVSITYHAFRPVLYISPYYFHVQFDLDNSLIQQINDGDKFHSKIVSFSLLMIRWIRTFFCSALELERYLISSEFSVTLLLPRKMDENGSRKLHNLEAHLLSESQKDLKIRFNGEKWEEVITEVKKQMGLAGPLVLVSFLQYSLQLISIMFIGHLGELQLSGASMAFSFAGVTGFSLLLGMGSALETLCGQAYGGKQYEMLGIHMQRAMVVLSLICIPIALLWASIEQILTILKQDPLISEQAGIYGKWLIPSIIPYGLLQCQFRFLQTQHLTSPLLLSTAASSSIHLLVCWGLVFGFGFGIKGAAFSTAITYWINVFILAFYIKFSPHCQKTWTGFSIHGIKNLISFLALAVPSSLMVCLEFWSYEFLVLMSGLLPNPELETSMLSISLSTSSLVFRIAYGFGSAVSTRVSNELGAGKALAAKLAVKVVVVLGLAEGIALGILLISLRNIWGFLFTNELQVVQYLSAIMPILAISNFMDAIQGVLSGTARGCGWQKIGAWVNLGAYYLVGLPCAITFTFVLHFGGKGLWMGITCGSCLQSILLLLVAFNINWEDQASKAKERMIGMSTPATATATSAIFVVLAGLCFVILNSDNLMGRWLPIVGLLAVAGVAVVAARATMVAWITVLVLLAFAGNRRRVLVKQGRKITADVAMYLAAVMVKERGLIAVAFAAVFSLVAVVRSTEIDLLSFSV 1208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33685921 33698749 + CrPI670011_06g026000.1 Cre06g2600 502062

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2600 1208 Coils Coil 158 185 - -
Cre06g2600 1208 Coils Coil 98 118 - -
Cre06g2600 1208 Pfam MatE 648 807 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cre06g2600 1208 Pfam MatE 869 1030 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cre06g2600 1208 Gene3D Ribonuclease Inhibitor 338 451 IPR032675 -
Cre06g2600 1208 SMART LRR_bac_2 308 327 - -
Cre06g2600 1208 SMART LRR_bac_2 332 351 - -
Cre06g2600 1208 SMART LRR_bac_2 241 258 - -
Cre06g2600 1208 SMART LRR_bac_2 403 422 - -
Cre06g2600 1208 SMART LRR_bac_2 355 374 - -
Cre06g2600 1208 SMART LRR_bac_2 262 281 - -
Cre06g2600 1208 SMART LRR_bac_2 378 399 - -
Cre06g2600 1208 SMART LRR_bac_2 285 304 - -
Cre06g2600 1208 FunFam Plant intracellular Ras-group-related LRR protein 9 140 323 - -
Cre06g2600 1208 ProSiteProfiles Leucine-rich repeat profile. 405 426 IPR001611 GO:0005515(InterPro)
Cre06g2600 1208 ProSiteProfiles Leucine-rich repeat profile. 264 285 IPR001611 GO:0005515(InterPro)
Cre06g2600 1208 Pfam Leucine rich repeat 221 275 IPR001611 GO:0005515(InterPro)
Cre06g2600 1208 Pfam Leucine rich repeat 380 439 IPR001611 GO:0005515(InterPro)
Cre06g2600 1208 Pfam Leucine rich repeat 309 368 IPR001611 GO:0005515(InterPro)
Cre06g2600 1208 Coils Coil 130 150 - -
Cre06g2600 1208 MobiDBLite consensus disorder prediction 43 58 - -
Cre06g2600 1208 SUPERFAMILY L domain-like 208 444 - -
Cre06g2600 1208 CDD MATE_eukaryotic 638 1074 IPR045069 GO:0042910(InterPro)|GO:1990961(InterPro)
Cre06g2600 1208 SMART LRR_typ_2 403 425 IPR003591 -
Cre06g2600 1208 SMART LRR_typ_2 309 331 IPR003591 -
Cre06g2600 1208 SMART LRR_typ_2 378 402 IPR003591 -
Cre06g2600 1208 SMART LRR_typ_2 285 308 IPR003591 -
Cre06g2600 1208 SMART LRR_typ_2 239 261 IPR003591 -
Cre06g2600 1208 SMART LRR_typ_2 426 449 IPR003591 -
Cre06g2600 1208 SMART LRR_typ_2 355 377 IPR003591 -
Cre06g2600 1208 SMART LRR_typ_2 332 354 IPR003591 -
Cre06g2600 1208 SMART LRR_typ_2 262 284 IPR003591 -
Cre06g2600 1208 NCBIfam MATE family efflux transporter 648 1045 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cre06g2600 1208 FunFam Plant intracellular Ras-group-related LRR protein 2 327 500 - -
Cre06g2600 1208 MobiDBLite consensus disorder prediction 25 61 - -
Cre06g2600 1208 Gene3D Ribonuclease Inhibitor 155 337 IPR032675 -
Cre06g2600 1208 Coils Coil 200 220 - -
Cre06g2600 1208 PANTHER MULTIDRUG RESISTANCE PROTEIN 631 1071 - GO:0016020(PANTHER)|GO:0022857(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2600 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2600 Cre-Chr6:33685921 Cre11g1676 Cre-Chr11:28111717 1.80E-125 dispersed
Cre11g2197 Cre-Chr11:33687241 Cre06g2600 Cre-Chr6:33685921 8.40E-87 transposed
Cre05g2741 Cre-Chr5:38258010 Cre06g2600 Cre-Chr6:33685921 4.50E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g821 . . . . . Bpe13g00264 . . . . . . . . . . . Bhi02g00602 . . . . . . Cla06g01700 Cam06g1888 Cec06g1937 Cco06g1941 Clacu06g1844 Cmu06g1785 Cre06g2600 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00103 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000257 4 6 1 5 3 6 0 7 6 5 4 6 6 6 5 5 6 3 3 7 7 4 2 7 6 4 3 8 8 10 153