Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2601 ATGGAAGCTGGGAGTAGATTCTACTCTGCTACGGATGAGTTCAGATTGGAAGGCAAATGGTTGGTTGACCCCAGGCATCTTTTCGTTGGACCTAGAATTGGAGAGGGAGCTCATGCCAAAGTTTACGAGGGCAAATATAAGAACCAGACTGTTGCTATCAAAATTGTTCATAAAGGGGAAACAGCTGATGAGGTTGCAAAGAAAGAGGCTCGGTTTGCTCGAGAAGTTGCAATGCTGTCTAAAGTACAACATAAGAATCTTGTCAAGTTTATTGGTGCCTGCAAGGAGCCTGTAATGGTGATAGTAACCGAGCTTTTATTAGGAGGGACCTTACGAAAGTACCTGCTCAACATGCGCCCACGGTGCTTGGACACACGTGTAGCAGTTGGTTTTGCGCTTGATATTGCTCGTGCTATGGAATGTCTTCACTCACATGGCATCATACACCGTGATCTGAAACCTGAGAACCTTCTGTTGACTGCAGATCACAAAACAGTTAAATTAGCTGATTTTGGTTTGGCAAGAGAAGAGTCGTTGACGGAGATGATGACTGCAGAGACGGGGACATACCGTTGGATGGCTCCAGAGTTGTACAGCACTGTGACACTAAGGCAAGGGGAGAAGAAACATTACAACCATAAAGTGGATGCCTATAGCTTTGCTATTGTGTTATGGGAACTGCTACACAACAAGTTGCCATTTGAAGGCATGTCAAATCTTCAAGCAGCATATGCAGCTGCTTTTAAGAATGTTAGGCCTAGCGCAGAGAATATTCCAGAGGAACTGGCTATCATTCTAACATCATGCTGGCAGGAGGATGCAAATGCTCGTCCAAATTTCACCCAAATAATCCAAATGTTACTTAATTACCTTTATACCATTTCACCCCCTGAGCCGATGATACCTTCCCGAATTTTCTCTTCTGAGAACACTGTTTTTCCTCCTGAGTCTCCCGGAACAAGCTCACTGATGGCAGTCCGTGACGATTCAGGGGACACTCCAAAAGCTAAAATGGAAAATAATCCCAGAGGTGGTTTTAGTTATGTAGTATCACAGCCTAAGCCTTACATCATCATGGTAGAATGGAAGATCATCCTGATGCTTGGTTGTAAGATCTTGAAGATTCAACTTTCAAATCATTGCTACCAGTAA 1152 43.84 MEAGSRFYSATDEFRLEGKWLVDPRHLFVGPRIGEGAHAKVYEGKYKNQTVAIKIVHKGETADEVAKKEARFAREVAMLSKVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLLNMRPRCLDTRVAVGFALDIARAMECLHSHGIIHRDLKPENLLLTADHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELLHNKLPFEGMSNLQAAYAAAFKNVRPSAENIPEELAIILTSCWQEDANARPNFTQIIQMLLNYLYTISPPEPMIPSRIFSSENTVFPPESPGTSSLMAVRDDSGDTPKAKMENNPRGGFSYVVSQPKPYIIMVEWKIILMLGCKILKIQLSNHCYQ 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33704064 33706600 + CrPI670011_06g026010.1 Cre06g2601 502063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2601 383 FunFam Kinase suppressor of Ras 1 16 106 - -
Cre06g2601 383 SMART serkin_6 27 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g2601 383 Gene3D Transferase(Phosphotransferase) domain 1 108 296 - -
Cre06g2601 383 MobiDBLite consensus disorder prediction 316 339 - -
Cre06g2601 383 PANTHER SERINE-THREONINE PROTEIN KINASE 25 288 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cre06g2601 383 PRINTS Tyrosine kinase catalytic domain signature 215 237 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g2601 383 PRINTS Tyrosine kinase catalytic domain signature 258 280 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g2601 383 PRINTS Tyrosine kinase catalytic domain signature 103 116 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g2601 383 PRINTS Tyrosine kinase catalytic domain signature 141 159 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g2601 383 CDD STKc_MAP3K-like 33 287 - -
Cre06g2601 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g2601 383 Pfam Protein tyrosine and serine/threonine kinase 32 287 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g2601 383 ProSiteProfiles Protein kinase domain profile. 27 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g2601 383 FunFam serine/threonine-protein kinase HT1 108 307 - -
Cre06g2601 383 SUPERFAMILY Protein kinase-like (PK-like) 19 316 IPR011009 -
Cre06g2601 383 Gene3D Phosphorylase Kinase; domain 1 15 106 - -
Cre06g2601 383 ProSitePatterns Protein kinases ATP-binding region signature. 33 54 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2601 Cre-Chr6:33704064 Cre10g2370 Cre-Chr10:37805218 6.90E-116 dispersed
Cre04g1551 Cre-Chr4:34121729 Cre06g2601 Cre-Chr6:33704064 2.60E-84 transposed
Cre01g0525 Cre-Chr1:4536100 Cre06g2601 Cre-Chr6:33704064 1.80E-144 wgd
Cre10g1526 Cre-Chr10:29191485 Cre06g2601 Cre-Chr6:33704064 3.30E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64246 PF07714 PK_Tyr_Ser-Thr 4.10E-58 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2601 - - - 0.0