Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2607 ATGACCTTCATGTTGCAGAGTTCTTGTGAAGTGATGGGTGGGAAGAGTTCTAAGCATGGAAGTTCAAGGCGGATTTCGTCTAGTCGGTCGAACTCGCAGCAGCGGAGTCATTACGGTTATCCACAGTCACCATATGCTCAATCAAGAAGCACGCCGCAGTATCGGTATGCACCTTCAACTCCTAGCTATGGTGGAACTCAAGCCCCTGAGACAAGAAAGAGGCTGGAGAGGAAGTATTCAAGGATAGATGATAACTATAATAGTCTAGAGCAGGTTACTGAGGCATTGGCTCGTGCTGGCCTGGAGTCCTCGAATCTTATCGTCGGTATAGATTTCACGAAGAGCAATGAGTGGACAGGTGCAAGATCATTTAACCGTAGAAGTTTGCATCACATTGGAGATGAGCAAAATCCCTATGAACAAGCAATAGCAATTATTGGACAAACATTATCTTCCTTCGATGAGGATAATTTGATTCCTTGCTTTGGTTTTGGAGATGCATCAACTCATGACCAAGAGGTTTTCAGCTTTTATCCCGACGAGCGATTTTGTAATGGATTTGAACAAGTGTTGGGTAGATATAGGGAACTGGTGCCTCATCTTCGACTTGCAGGACCAACATCATTTGCCCCGATCATCGAAATGGCTATCACAATTGTCGAGCAAAGTGGCGGCCAATACCATGTATTGGTAATAATAGCTGATGGTCAGGTTACAAGAAGTGTAGATACTGAGCGTGGACAGTTTAGCCCACAGGAAAAGAAAACCATTGAAGCGATTGTGAAAGCTAGTGAATACCCCTTGTCGATTATACTAGTTGGAGTAGGAGATGGACCTTGGGACATGATGAGGGAATTTGATGACAACATCCCAGCTCGAGCATTTGATAACTTCCAATTTGTAAATTTCACAAATATAATGTTGAAGAATATGGATCGATCCAGAAAGGAAACGGAATTTGCTCTTGCAGCACTCATGGAAATACCCTCCCAGTATAAAGCTACACTGGAGCTTGATATTTTGGGTGCCAGTAGAGGGAAGGCAATCGACCGGATTCCTCTTCCCCCTCCTCGTTATGGACCTAGCACCCAGAAAACCTCAAACTCAAGCAGTTCTCGCCCAATGGCGCCCTCATTTGGTGGAGCTGCTCCTGCCCGAACTGCACCTCCTCTTAGTTCGGTTTCTGATGCTCATGCTTGTCCAATTTGCATCTCCAATGCAAAGGATATGGCTTTTGGTTGCGGACATCAGACATGCTGTGAATGTGGACAGGATCTTCAGCAGTGCCCCATATGCCGCAGCTTTATTGACACTAGGATAAAGCTTTATTAG 1332 45.12 MTFMLQSSCEVMGGKSSKHGSSRRISSSRSNSQQRSHYGYPQSPYAQSRSTPQYRYAPSTPSYGGTQAPETRKRLERKYSRIDDNYNSLEQVTEALARAGLESSNLIVGIDFTKSNEWTGARSFNRRSLHHIGDEQNPYEQAIAIIGQTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDERFCNGFEQVLGRYRELVPHLRLAGPTSFAPIIEMAITIVEQSGGQYHVLVIIADGQVTRSVDTERGQFSPQEKKTIEAIVKASEYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTNIMLKNMDRSRKETEFALAALMEIPSQYKATLELDILGASRGKAIDRIPLPPPRYGPSTQKTSNSSSSRPMAPSFGGAAPARTAPPLSSVSDAHACPICISNAKDMAFGCGHQTCCECGQDLQQCPICRSFIDTRIKLY 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33746887 33749739 + CrPI670011_06g026070.1 Cre06g2607 502069

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2607 443 Pfam Copine 128 341 IPR010734 -
Cre06g2607 443 SMART VWA_4 103 306 IPR002035 -
Cre06g2607 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 385 443 IPR013083 -
Cre06g2607 443 SUPERFAMILY RING/U-box 397 438 - -
Cre06g2607 443 PANTHER COPINE FAMILY PROTEIN 1 5 443 IPR052079 GO:0004842(PANTHER)|GO:0005634(PANTHER)|GO:0016567(PANTHER)
Cre06g2607 443 Coils Coil 72 92 - -
Cre06g2607 443 SUPERFAMILY vWA-like 105 287 IPR036465 -
Cre06g2607 443 MobiDBLite consensus disorder prediction 361 376 - -
Cre06g2607 443 ProSiteProfiles Zinc finger RING-type profile. 400 433 IPR001841 -
Cre06g2607 443 MobiDBLite consensus disorder prediction 349 387 - -
Cre06g2607 443 MobiDBLite consensus disorder prediction 1 67 - -
Cre06g2607 443 Pfam Zinc finger, C3HC4 type (RING finger) 398 438 - -
Cre06g2607 443 MobiDBLite consensus disorder prediction 1 72 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2607 K16280 - - csv:101221610 786.949
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2607 Cre-Chr6:33746887 Cre11g1559 Cre-Chr11:25204741 6.90E-19 dispersed
Cre04g1734 Cre-Chr4:35446751 Cre06g2607 Cre-Chr6:33746887 1.10E-119 transposed
Cre01g0518 Cre-Chr1:4468762 Cre06g2607 Cre-Chr6:33746887 1.30E-161 wgd
Cre10g1518 Cre-Chr10:29134581 Cre06g2607 Cre-Chr6:33746887 3.20E-157 wgd
Cre05g2769 Cre-Chr5:38475260 Cre06g2607 Cre-Chr6:33746887 1.90E-162 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g862 . . . . . . . . . . Cma10g00087 . Car10g00077 Car11g00057 . . Cpe04g01589 Bhi02g00592 . . . Hepe09g0092 . . Cla06g01707 Cam06g1895 Cec06g1944 Cco06g1948 Clacu06g1851 Cmu06g1792 Cre06g2607 . . Cone13ag0185 Cone19ag0178 . . . . . . . . . . . . . Cmo10g00088 . . . . . . . . . . . . . . . . . . . . . Lsi06g01600 Csa01g00097 Chy02g02625 Cme02g02023
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000334 5 8 3 4 5 2 4 4 4 4 2 2 4 4 4 7 3 7 6 4 5 4 3 3 3 3 4 11 11 3 136