Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2613 ATGGCTTCACCTTCCTCTAAACTCCTTCAACTCTTGGCTTTTCTCTCCGTTCTTCTCCGCGTCCATGCCCGATTGAACCTCGATCCTTCAGATCTCAGAGCCTTTTCTATCATAAAAAATGACTTGGGCATTGACGGTCAACTCTCCCCCTCCCCATGCCACAACGCCGGTGTGTTCTGCGAGCGGCGGCTCTCCGACAACGGCACTTATGTTTTGAGGATCACCAGGCTCATTTTCAACTCCAAAGGTCTCACTGGTTCTCTTTCTCCGGCTATCGGGCGGCTCACGGAGTTGCAAGAGCTTACGGTTTCTAACAATCACCTCGTTGACCAAGTACCTCCCCAAATCGTTGACTGCCGAAAACTGGAAATTCTCGATCTCCAAAACAACCAATTTTCTGGAAAAGTTCCGTCTGGATTGTCCTCACTGATTCGCCTTCGAGTCATCGATCTTTCGTCCAATAAATTCTCGGGGAGTTTGGGTTTCTTGAAGCATTTCCCCAACTTGGAAAGTCTCTCCATAGCCAACAATTACTTCACAGGGAAGATCCCAGCTTCAATTCGTTCATTTCGCAATCTTCGAGTCTTCAACTTCTCCGGAAATCGCCTTCTCGAAAGTTCAGCCCCTATCGTGAAGGGTGTTGAGTTCTATTCGGCTACAGAAGTTCCCATGCGTTATAAGTTAGCTGAGAATTCCAGTACGAAAGGCACGCACAGGGCCGCCGCTACAGCGCCAACTTCGAGTGCTCAAGCTCCATCTCCCGTGCCACCCCCTACTCATAAGCATCGGAAAAATGAAGCAAAGAAGGTAATTTCTTGGATACTTGGGTTCCTCGCTGGAGCAATTGCTGGGAGTTTGTCAGGGTTTATCTTTTCTCTACTGTTTAAACTCGTCATAGCAGCTATAAAAGGTGGAAGCAAGAATTCAGGTCCCTCAATCTTTGCTCCTAAGTTGATAAAACGAGATGATTTGGCTTTTCTAGAGAAAGACGATGCGCTTGCATCGCTGGAGCTGATTGGAAAAGGTGGATGTGGAGAAGTTTACAAAGCTGAATTACCAGAAAAAAGTGGGAAAATGTTTGCAATAAAGAAGATAAGTCAACCCCCAAAGGATGCGGCCGAGTTAGCTGACGAGGATAGCAAGCTTATGAGCAAGAAAATGCGTCAGATCAAGTCAGAGATCAAAACTGTGGGCGAAATCCGGCATCGGAATCTTCTTCCTCTTGTGGCCCATGTCCCTCGTCCTGATTGCCACTACCTTGTGTATGAATTGATGAAGAATGGCAGCTTGCAAGATATGTTGAATCAGGTTTCAGCAGGAGTGAAAGAACTAGATTGGCTTACTCGGCATAAAATTGCTCTTGGAGTTGCATCTGGGCTTGAGTATCTTCACATGAATCATACCCCACGTATTATTCACAGGGATCTGAAGCCTGCAAATGTTTTGCTTGATGACGACATGGAAGCTCGAATTGCTGATTTCGGGCTGGCAAAAGCAATGCCAGATGCCCAAACTCACATAACAGCTTCAAATGTTGCAGGTACCGTAGGATACATCGCACCAGAGTATCATCAGACAATGAAGTTCACTGATAAATGTGATATATACGGCTTTGGGGTTCTGCTAGGTGTCTTGGTGATCGGGAAACTCCCATCTGATCAGTTTTTCCAAAACACGGATGAGATGAGTTTGGTTAAGTGGATGAAGAATGTTATGACTTCGGATAATCCTAGGGGAGCCATCGATCCAAAGCTCCTGGGAAATGGCTGGGAGGAGCAAATGCTTTTGGCCCTCAAAATTGCCTGCTTTTGCACTATGGATAATCCAAAAGAGAGGCCTAATAGCAAGGATGTCAGATGCATGCTGTCCCAAATCAAGCACGATGTACCTGAAACTCCCTCTCAAAATGTCTAA 1914 46.13 MASPSSKLLQLLAFLSVLLRVHARLNLDPSDLRAFSIIKNDLGIDGQLSPSPCHNAGVFCERRLSDNGTYVLRITRLIFNSKGLTGSLSPAIGRLTELQELTVSNNHLVDQVPPQIVDCRKLEILDLQNNQFSGKVPSGLSSLIRLRVIDLSSNKFSGSLGFLKHFPNLESLSIANNYFTGKIPASIRSFRNLRVFNFSGNRLLESSAPIVKGVEFYSATEVPMRYKLAENSSTKGTHRAAATAPTSSAQAPSPVPPPTHKHRKNEAKKVISWILGFLAGAIAGSLSGFIFSLLFKLVIAAIKGGSKNSGPSIFAPKLIKRDDLAFLEKDDALASLELIGKGGCGEVYKAELPEKSGKMFAIKKISQPPKDAAELADEDSKLMSKKMRQIKSEIKTVGEIRHRNLLPLVAHVPRPDCHYLVYELMKNGSLQDMLNQVSAGVKELDWLTRHKIALGVASGLEYLHMNHTPRIIHRDLKPANVLLDDDMEARIADFGLAKAMPDAQTHITASNVAGTVGYIAPEYHQTMKFTDKCDIYGFGVLLGVLVIGKLPSDQFFQNTDEMSLVKWMKNVMTSDNPRGAIDPKLLGNGWEEQMLLALKIACFCTMDNPKERPNSKDVRCMLSQIKHDVPETPSQNV 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33779339 33781252 + CrPI670011_06g026130.1 Cre06g2613 502075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2613 637 SMART serkin_6 333 626 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g2613 637 FunFam Leucine-rich repeat receptor-like protein kinase 425 632 - -
Cre06g2613 637 SUPERFAMILY L domain-like 47 206 - -
Cre06g2613 637 FunFam Leucine-rich repeat receptor protein kinase EMS1 69 163 - -
Cre06g2613 637 Pfam Leucine rich repeat 97 156 IPR001611 GO:0005515(InterPro)
Cre06g2613 637 SUPERFAMILY Protein kinase-like (PK-like) 333 626 IPR011009 -
Cre06g2613 637 Gene3D Ribonuclease Inhibitor 17 159 IPR032675 -
Cre06g2613 637 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 261 627 IPR051564 GO:0016020(PANTHER)
Cre06g2613 637 Gene3D Transferase(Phosphotransferase) domain 1 425 635 - -
Cre06g2613 637 MobiDBLite consensus disorder prediction 231 249 - -
Cre06g2613 637 Gene3D Phosphorylase Kinase; domain 1 326 424 - -
Cre06g2613 637 MobiDBLite consensus disorder prediction 231 264 - -
Cre06g2613 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g2613 637 Pfam Protein kinase domain 336 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g2613 637 Gene3D Ribonuclease Inhibitor 160 214 IPR032675 -
Cre06g2613 637 Pfam Leucine Rich Repeat 168 189 IPR001611 GO:0005515(InterPro)
Cre06g2613 637 ProSiteProfiles Protein kinase domain profile. 333 630 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2613 Cre-Chr6:33779339 Cre07g0500 Cre-Chr7:2793156 8.60E-55 dispersed
Cre07g1550 Cre-Chr7:30922006 Cre06g2613 Cre-Chr6:33779339 3.80E-40 dispersed
Cre06g2613 Cre-Chr6:33779339 Cre05g0980 Cre-Chr5:9047551 5.00E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64247 PF00069 Pkinase 1.20E-42 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2613 - - - 0.0