Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2615 ATGGCAATGGCACACGAAACGACGCCGCTTAGGGTAGCCACTCTCACAACCTCGAACACCACTTGCCTGGCCGCCCACAATGGCCTCCTCTACTCCGGCTCCGCCAACCAAATCGCCGTCTTCGATTTAACCAACGACTTCACGCAAATCGACACTCTTCGCATAAACGACGCCGCTTCGGGGTCCGTTAAGTCCATCGCTTTTGGGCCTTGGAAAATCTTCACGGCCCATCAGGATTGCAAGATCCGCGTATGGAAAATCACGCGCTCGGAACCGCCACGTCATCGTCTTCTGGCAACTCTCCCCACCGTTAAAGACCGGCTTTACCGGTTTATTTCGCCGGGGAATTACGTACGTGTACGGCGCCACCACAAGCGGCTGTGGATTGAGCATTGGGATGCGGTTTCTGGGGTGGTGGTGAATGGAGGTTTTGTGTACTCTGTTTCATGGGATCGGAGTTTTAAGGTTTGGAGTGCTTCGGATCATAAGTGTCTGTTGTCCGTCAAAGCTCATGACGATGCGGTCAACGCGGTTGCTGTAGGTCAGAACGGCGTCGTTTATACCGGCTCTGCGGATGGGGTTATTGGAGTTTGGGAGATTAGGGAGGGGAAGAAGAAGAAGTATACGTTGGTTGGGACTTTGGACAACCACAAATCCACGGTAAATGCGATTGCGTTGAACGAGGGAGGTTGGGCAATGTTTTCGGGGAGCAGTGACCGTTCAATAATGGTGTGGAAGAAAGAAGAGGCCGGAAAGCAAATTGCGTTTGTTGAGGCTTTATCGGGTCATCGAGGGGCTGTTTTGTCCTTGTGTACTCTCCTAGATTTCTTAGTCAGTGGCTCTGAAGATCGGACGCTCAGGATTTGGAGAGGCGATGTCACTAACGGCTACCATTGTACGGCTGTGATGGATGGACACAGGTCGCCGGTGAAGTCTTTGGTTGCCGTCGGAGCCGGTGAACGAAGTTTGATGATCTGTAGTGCCAGTTTGGACGGAGAAATACAAGTTTGGAGTTTCATGTTTTGA 1026 51.95 MAMAHETTPLRVATLTTSNTTCLAAHNGLLYSGSANQIAVFDLTNDFTQIDTLRINDAASGSVKSIAFGPWKIFTAHQDCKIRVWKITRSEPPRHRLLATLPTVKDRLYRFISPGNYVRVRRHHKRLWIEHWDAVSGVVVNGGFVYSVSWDRSFKVWSASDHKCLLSVKAHDDAVNAVAVGQNGVVYTGSADGVIGVWEIREGKKKKYTLVGTLDNHKSTVNAIALNEGGWAMFSGSSDRSIMVWKKEEAGKQIAFVEALSGHRGAVLSLCTLLDFLVSGSEDRTLRIWRGDVTNGYHCTAVMDGHRSPVKSLVAVGAGERSLMICSASLDGEIQVWSFMF 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33784950 33786892 - CrPI670011_06g026150.1 Cre06g2615 502077

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2615 341 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 12 338 IPR045182 -
Cre06g2615 341 PRINTS G protein beta WD-40 repeat signature 277 291 IPR020472 -
Cre06g2615 341 PRINTS G protein beta WD-40 repeat signature 233 247 IPR020472 -
Cre06g2615 341 PRINTS G protein beta WD-40 repeat signature 186 200 IPR020472 -
Cre06g2615 341 FunFam BnaA09g28200D protein 118 203 - -
Cre06g2615 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 260 289 IPR001680 GO:0005515(InterPro)
Cre06g2615 341 Pfam WD domain, G-beta repeat 163 198 IPR001680 GO:0005515(InterPro)
Cre06g2615 341 Pfam WD domain, G-beta repeat 209 245 IPR001680 GO:0005515(InterPro)
Cre06g2615 341 Pfam WD domain, G-beta repeat 299 338 IPR001680 GO:0005515(InterPro)
Cre06g2615 341 Pfam WD domain, G-beta repeat 258 289 IPR001680 GO:0005515(InterPro)
Cre06g2615 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 214 246 IPR001680 GO:0005515(InterPro)
Cre06g2615 341 Gene3D - 182 340 IPR015943 GO:0005515(InterPro)
Cre06g2615 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 168 204 - -
Cre06g2615 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 214 246 - -
Cre06g2615 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 260 289 - -
Cre06g2615 341 Gene3D - 4 113 IPR015943 GO:0005515(InterPro)
Cre06g2615 341 SMART WD40_4 296 338 IPR001680 GO:0005515(InterPro)
Cre06g2615 341 SMART WD40_4 253 290 IPR001680 GO:0005515(InterPro)
Cre06g2615 341 SMART WD40_4 207 246 IPR001680 GO:0005515(InterPro)
Cre06g2615 341 SMART WD40_4 8 42 IPR001680 GO:0005515(InterPro)
Cre06g2615 341 SMART WD40_4 161 199 IPR001680 GO:0005515(InterPro)
Cre06g2615 341 SMART WD40_4 114 158 IPR001680 GO:0005515(InterPro)
Cre06g2615 341 SMART WD40_4 46 86 IPR001680 GO:0005515(InterPro)
Cre06g2615 341 ProSitePatterns Trp-Asp (WD) repeats signature. 186 200 IPR019775 -
Cre06g2615 341 Gene3D - 115 178 IPR015943 GO:0005515(InterPro)
Cre06g2615 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 168 208 IPR001680 GO:0005515(InterPro)
Cre06g2615 341 SUPERFAMILY WD40 repeat-like 17 339 IPR036322 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2615 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2615 Cre-Chr6:33784950 Cre07g1677 Cre-Chr7:32208578 2.60E-34 dispersed
Cre01g1294 Cre-Chr1:26191064 Cre06g2615 Cre-Chr6:33784950 1.60E-48 transposed
Cre09g1778 Cre-Chr9:36176454 Cre06g2615 Cre-Chr6:33784950 2.50E-50 transposed
Cre05g2772 Cre-Chr5:38504718 Cre06g2615 Cre-Chr6:33784950 5.40E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g871 . . . . . Bpe13g00263 . . . . . . . . . . . Bhi02g00576 Tan09g2327 Cmetu02g1365 . . . . Cla06g01714 . . Cco06g1956 . . Cre06g2615 . . . . . . . . . . . . . . . . . Cmo10g00081 . . . . . . . . . . . . . . Cla01g01398 Cam01g1460 Cec01g1499 . Clacu01g1484 Cmu01g1379 Cre01g1294 . Csa01g00089 Chy02g02631 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003359 2 2 1 1 2 2 1 2 2 1 2 2 2 0 2 3 2 1 0 2 2 2 1 2 2 0 2 2 2 2 49